Gene annotation
Transcriptome id Sobic.002G300400.1
Synonym Sb02g033100
Functional annotation serine/threonine-protein kinase CTR1, putative, expressed
UniProt C5X8H9
Pfam PF01842 PF07714
Panther DB PTHR23257 PTHR23257:SF347
NCBI CDD KOG0192; Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs
KEGG Orthology -
Gene Ontology GO:0016597; amino acid binding GO:0008152metabolic process GO:0006468protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G35780 : ACT-like protein tyrosine kinase family protein
RAP-DB (Rice) LOC_Os07g29330.2 : serine/threonine-protein kinase CTR1, putative, expressed
MaizeGDB (Corn) Zm00025a047832
Brachypodium KQK16303
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
2 Sobic.006G124900 MA3 domain containing protein, expressed -
3 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
4 Sobic.010G264100 expressed protein -
5 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
6 Sobic.002G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
7 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
9 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
10 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
11 Sobic.004G196700 expressed protein -
12 Sobic.005G187200 expressed protein -
13 Sobic.010G042900 expressed protein -
14 Sobic.005G130200 - -
15 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
16 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
17 Sobic.006G122400 uncharacterized glycosyltransferase, putative, expressed -
18 Sobic.008G024600 expressed protein -
19 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
20 Sobic.002G343800 - -


Gene co-expression network
sample Sobic002G300400 Sobic002G300400 Sobic010G001600 Sobic010G001600 Sobic002G300400--Sobic010G001600 Sobic006G124900 Sobic006G124900 Sobic002G300400--Sobic006G124900 Sobic001G543800 Sobic001G543800 Sobic002G300400--Sobic001G543800 Sobic010G264100 Sobic010G264100 Sobic002G300400--Sobic010G264100 Sobic008G160700 Sobic008G160700 Sobic002G300400--Sobic008G160700 Sobic002G165300 Sobic002G165300 Sobic002G300400--Sobic002G165300 Sobic005G177800 Sobic005G177800 Sobic002G300400--Sobic005G177800 Sobic007G130600 Sobic007G130600 Sobic002G300400--Sobic007G130600 Sobic001G194900 Sobic001G194900 Sobic002G300400--Sobic001G194900 Sobic010G001600--Sobic008G160700 Sobic010G001600--Sobic006G124900 Sobic010G001600--Sobic001G194900 Sobic010G001600--Sobic005G177800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic010G001600--Sobic002G300400 Sobic010G276800 Sobic010G276800 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic006G124900--Sobic005G177800 Sobic006G124900--Sobic010G001600 Sobic004G196700 Sobic004G196700 Sobic006G124900--Sobic004G196700 Sobic006G124900--Sobic001G543800 Sobic006G124900--Sobic010G276800 Sobic002G313300 Sobic002G313300 Sobic006G124900--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic006G124900--Sobic001G477800 Sobic006G124900--Sobic007G130600 Sobic006G124900--Sobic002G300400 Sobic001G543800--Sobic010G001600 Sobic001G543800--Sobic005G177800 Sobic006G128900 Sobic006G128900 Sobic001G543800--Sobic006G128900 Sobic001G543800--Sobic006G124900 Sobic001G543800--Sobic001G194900 Sobic001G543800--Sobic004G196700 Sobic001G543800--Sobic008G024600 Sobic009G040700 Sobic009G040700 Sobic001G543800--Sobic009G040700 Sobic004G256600 Sobic004G256600 Sobic001G543800--Sobic004G256600 Sobic008G041700 Sobic008G041700 Sobic010G264100--Sobic008G041700 Sobic010G264100--Sobic002G300400 Sobic003G268300 Sobic003G268300 Sobic010G264100--Sobic003G268300 Sobic001G413500 Sobic001G413500 Sobic010G264100--Sobic001G413500 Sobic001G094000 Sobic001G094000 Sobic010G264100--Sobic001G094000 Sobic001G168400 Sobic001G168400 Sobic010G264100--Sobic001G168400 Sobic009G134500 Sobic009G134500 Sobic010G264100--Sobic009G134500 Sobic005G149500 Sobic005G149500 Sobic010G264100--Sobic005G149500 Sobic010G264100--Sobic001G477800 Sobic008G160700--Sobic010G001600 Sobic008G160700--Sobic001G194900 Sobic010G078100 Sobic010G078100 Sobic008G160700--Sobic010G078100 Sobic008G160700--Sobic007G130600 Sobic009G235900 Sobic009G235900 Sobic008G160700--Sobic009G235900 Sobic006G214500 Sobic006G214500 Sobic008G160700--Sobic006G214500 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic009G027000 Sobic009G027000 Sobic008G160700--Sobic009G027000 Sobic009G156000 Sobic009G156000 Sobic002G165300--Sobic009G156000 Sobic002G165300--Sobic004G196700 Sobic002G165300--Sobic005G149500 Sobic007G211000 Sobic007G211000 Sobic002G165300--Sobic007G211000 Sobic010G199600 Sobic010G199600 Sobic002G165300--Sobic010G199600 Sobic007G078000 Sobic007G078000 Sobic002G165300--Sobic007G078000 Sobic002G284200 Sobic002G284200 Sobic002G165300--Sobic002G284200 Sobic010G026400 Sobic010G026400 Sobic002G165300--Sobic010G026400 Sobic007G037100 Sobic007G037100 Sobic002G165300--Sobic007G037100 Sobic005G177800--Sobic006G124900 Sobic005G177800--Sobic004G196700 Sobic005G177800--Sobic010G001600 Sobic005G177800--Sobic001G543800 Sobic004G031700 Sobic004G031700 Sobic005G177800--Sobic004G031700 Sobic005G177800--Sobic001G477800 Sobic005G177800--Sobic007G078000 Sobic005G177800--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic005G177800--Sobic009G000500 Sobic007G130600--Sobic001G194900 Sobic005G181000 Sobic005G181000 Sobic007G130600--Sobic005G181000 Sobic007G130600--Sobic008G160700 Sobic007G130600--Sobic006G124900 Sobic007G130600--Sobic005G177800 Sobic007G130600--Sobic009G027000 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G130600--Sobic007G078000 Sobic001G194900--Sobic008G160700 Sobic001G194900--Sobic010G001600 Sobic001G194900--Sobic007G130600 Sobic005G187200 Sobic005G187200 Sobic001G194900--Sobic005G187200 Sobic001G194900--Sobic001G543800 Sobic001G194900--Sobic009G235900 Sobic001G424700 Sobic001G424700 Sobic001G194900--Sobic001G424700 Sobic001G194900--Sobic005G177800 Sobic001G194900--Sobic005G130200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.