Gene annotation
Transcriptome id Sobic.006G122400.1
Synonym AtSIP2, Sb06g020280, SIP2
Functional annotation uncharacterized glycosyltransferase, putative, expressed
UniProt C5YAS8
Pfam PF05691
Panther DB PTHR31268 PTHR31268:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57520 : seed imbibition 2
RAP-DB (Rice) LOC_Os04g40520.1 : uncharacterized glycosyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a010976
Brachypodium PNT61306
Barley HORVU2Hr1G083080.9 , HORVU2Hr1G083080.8 , HORVU2Hr1G083080.5 , HORVU2Hr1G083080.4 , HORVU2Hr1G083080.7 , HORVU2Hr1G083080.6 , HORVU2Hr1G083080.1 , HORVU2Hr1G083080.3 , HORVU2Hr1G083080.2 , HORVU2Hr1G083080.18 , HORVU2Hr1G083080.11 , HORVU2Hr1G083080.10 , HORVU2Hr1G083080.13 , HORVU2Hr1G083080.12 , HORVU2Hr1G083080.15 , HORVU2Hr1G083080.14 , HORVU2Hr1G083080.17 , HORVU2Hr1G083080.16
Wheat TraesCS2D02G338200 , TraesCS2D02G338200 , TraesCS2B02G357600 , TraesCS2B02G357600 , TraesCS2A02G324700 , TraesCS2A02G324700 , TraesCS2A02G324700
Populus PNT04347 , PNT04349 , PNT04348 , PNT50580


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase
2 Sobic.010G218100 expressed protein -
3 Sobic.005G181000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
4 Sobic.002G284200 peroxisomal multifunctional enzyme type 2, putative, expressed -
5 Sobic.006G124900 MA3 domain containing protein, expressed -
6 Sobic.002G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
7 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
8 Sobic.010G218500 bZIP transcription factor domain containing protein, expressed -
9 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
10 Sobic.007G023700 MA3 domain containing protein, expressed -
11 Sobic.010G199600 hydrolase, NUDIX family, domain containing protein, expressed -
12 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
13 Sobic.010G042900 expressed protein -
14 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
15 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
16 Sobic.003G093600 methyltransferase, putative, expressed -
17 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
18 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
19 Sobic.004G196700 expressed protein -
20 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -


Gene co-expression network
sample Sobic006G122400 Sobic006G122400 Sobic009G027000 Sobic009G027000 Sobic006G122400--Sobic009G027000 Sobic010G218100 Sobic010G218100 Sobic006G122400--Sobic010G218100 Sobic005G181000 Sobic005G181000 Sobic006G122400--Sobic005G181000 Sobic002G284200 Sobic002G284200 Sobic006G122400--Sobic002G284200 Sobic006G124900 Sobic006G124900 Sobic006G122400--Sobic006G124900 Sobic002G165300 Sobic002G165300 Sobic006G122400--Sobic002G165300 Sobic007G078000 Sobic007G078000 Sobic006G122400--Sobic007G078000 Sobic010G218500 Sobic010G218500 Sobic006G122400--Sobic010G218500 Sobic007G130600 Sobic007G130600 Sobic006G122400--Sobic007G130600 Sobic009G027000--Sobic006G122400 Sobic009G027000--Sobic005G181000 Sobic008G160700 Sobic008G160700 Sobic009G027000--Sobic008G160700 Sobic004G297400 Sobic004G297400 Sobic009G027000--Sobic004G297400 Sobic010G078100 Sobic010G078100 Sobic009G027000--Sobic010G078100 Sobic009G027000--Sobic007G130600 Sobic001G156100 Sobic001G156100 Sobic009G027000--Sobic001G156100 Sobic009G027000--Sobic007G078000 Sobic004G320000 Sobic004G320000 Sobic009G027000--Sobic004G320000 Sobic010G218100--Sobic010G218500 Sobic003G117000 Sobic003G117000 Sobic010G218100--Sobic003G117000 Sobic010G218100--Sobic006G122400 Sobic004G188300 Sobic004G188300 Sobic010G218100--Sobic004G188300 Sobic007G150200 Sobic007G150200 Sobic010G218100--Sobic007G150200 Sobic001G222300 Sobic001G222300 Sobic010G218100--Sobic001G222300 Sobic002G039500 Sobic002G039500 Sobic010G218100--Sobic002G039500 Sobic002G253500 Sobic002G253500 Sobic010G218100--Sobic002G253500 Sobic009G242800 Sobic009G242800 Sobic010G218100--Sobic009G242800 Sobic005G181000--Sobic007G130600 Sobic005G181000--Sobic009G027000 Sobic005G181000--Sobic006G122400 Sobic005G181000--Sobic006G124900 Sobic001G439500 Sobic001G439500 Sobic005G181000--Sobic001G439500 Sobic005G181000--Sobic002G253500 Sobic007G185900 Sobic007G185900 Sobic005G181000--Sobic007G185900 Sobic002G313300 Sobic002G313300 Sobic005G181000--Sobic002G313300 Sobic005G181000--Sobic002G039500 Sobic002G284200--Sobic003G117000 Sobic002G284200--Sobic007G150200 Sobic001G451000 Sobic001G451000 Sobic002G284200--Sobic001G451000 Sobic007G211000 Sobic007G211000 Sobic002G284200--Sobic007G211000 Sobic003G093600 Sobic003G093600 Sobic002G284200--Sobic003G093600 Sobic002G284200--Sobic007G078000 Sobic002G284200--Sobic001G439500 Sobic002G284200--Sobic002G165300 Sobic002G283300 Sobic002G283300 Sobic002G284200--Sobic002G283300 Sobic005G177800 Sobic005G177800 Sobic006G124900--Sobic005G177800 Sobic010G001600 Sobic010G001600 Sobic006G124900--Sobic010G001600 Sobic004G196700 Sobic004G196700 Sobic006G124900--Sobic004G196700 Sobic001G543800 Sobic001G543800 Sobic006G124900--Sobic001G543800 Sobic010G276800 Sobic010G276800 Sobic006G124900--Sobic010G276800 Sobic006G124900--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic006G124900--Sobic001G477800 Sobic006G124900--Sobic007G130600 Sobic002G300400 Sobic002G300400 Sobic006G124900--Sobic002G300400 Sobic009G156000 Sobic009G156000 Sobic002G165300--Sobic009G156000 Sobic002G165300--Sobic004G196700 Sobic005G149500 Sobic005G149500 Sobic002G165300--Sobic005G149500 Sobic002G165300--Sobic007G211000 Sobic010G199600 Sobic010G199600 Sobic002G165300--Sobic010G199600 Sobic002G165300--Sobic007G078000 Sobic002G165300--Sobic002G284200 Sobic010G026400 Sobic010G026400 Sobic002G165300--Sobic010G026400 Sobic007G037100 Sobic007G037100 Sobic002G165300--Sobic007G037100 Sobic003G333600 Sobic003G333600 Sobic007G078000--Sobic003G333600 Sobic007G078000--Sobic004G196700 Sobic007G078000--Sobic007G185900 Sobic010G260500 Sobic010G260500 Sobic007G078000--Sobic010G260500 Sobic001G424700 Sobic001G424700 Sobic007G078000--Sobic001G424700 Sobic007G078000--Sobic005G149500 Sobic001G372700 Sobic001G372700 Sobic007G078000--Sobic001G372700 Sobic007G078000--Sobic001G451000 Sobic006G082600 Sobic006G082600 Sobic007G078000--Sobic006G082600 Sobic010G248200 Sobic010G248200 Sobic010G218500--Sobic010G248200 Sobic001G243901 Sobic001G243901 Sobic010G218500--Sobic001G243901 Sobic005G117901 Sobic005G117901 Sobic010G218500--Sobic005G117901 Sobic010G218500--Sobic002G253500 Sobic008G101350 Sobic008G101350 Sobic010G218500--Sobic008G101350 Sobic004G096200 Sobic004G096200 Sobic010G218500--Sobic004G096200 Sobic010G218500--Sobic007G211000 Sobic002G108800 Sobic002G108800 Sobic010G218500--Sobic002G108800 Sobic001G345333 Sobic001G345333 Sobic010G218500--Sobic001G345333 Sobic001G194900 Sobic001G194900 Sobic007G130600--Sobic001G194900 Sobic007G130600--Sobic005G181000 Sobic007G130600--Sobic008G160700 Sobic007G130600--Sobic006G124900 Sobic007G130600--Sobic005G177800 Sobic007G130600--Sobic009G027000 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G130600--Sobic007G078000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.