Gene annotation
Transcriptome id Sobic.003G202800.1
Synonym Sb03g026490
Functional annotation holocarboxylase synthetase, putative, expressed
UniProt C5XPI3
Pfam -
Panther DB PTHR33675 PTHR33675:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G09830 : Uncharacterised conserved protein UCP009193
RAP-DB (Rice) LOC_Os01g40690.1 : holocarboxylase synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a028538
Brachypodium KQK04589 , KQK08513
Barley HORVU3Hr1G051220.7 , HORVU3Hr1G051220.6 , HORVU3Hr1G051220.5 , HORVU3Hr1G051220.4 , HORVU3Hr1G051220.3 , HORVU3Hr1G051220.2 , HORVU3Hr1G051220.1 , HORVU3Hr1G051220.8 , HORVU5Hr1G056860.2 , HORVU5Hr1G056860.1
Wheat TraesCS3B02G242000 , TraesCS3D02G214300 , TraesCS5A02G195600 , TraesCS5D02G195400 , TraesCS3A02G211600 , TraesCS5B02G187800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G202800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
2 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
3 Sobic.004G271900 RMD5 homolog A, putative, expressed -
4 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
5 Sobic.003G437500 syntaxin 6, putative, expressed -
6 Sobic.006G128800 expressed protein -
7 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
8 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
9 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
10 Sobic.003G261300 arginine/serine-rich coiled-coil protein 1, putative, expressed -
11 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
12 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
13 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
14 Sobic.005G187200 expressed protein -
15 Sobic.001G315100 TKL_IRAK_CrRLK1L-1.16 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
16 Sobic.003G084700 - -
17 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
18 Sobic.003G093600 methyltransferase, putative, expressed -
19 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
20 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B


Gene co-expression network
sample Sobic003G202800 Sobic003G202800 Sobic006G088100 Sobic006G088100 Sobic003G202800--Sobic006G088100 Sobic001G107500 Sobic001G107500 Sobic003G202800--Sobic001G107500 Sobic004G271900 Sobic004G271900 Sobic003G202800--Sobic004G271900 Sobic008G034600 Sobic008G034600 Sobic003G202800--Sobic008G034600 Sobic003G437500 Sobic003G437500 Sobic003G202800--Sobic003G437500 Sobic006G128800 Sobic006G128800 Sobic003G202800--Sobic006G128800 Sobic002G157300 Sobic002G157300 Sobic003G202800--Sobic002G157300 Sobic007G011400 Sobic007G011400 Sobic003G202800--Sobic007G011400 Sobic007G205800 Sobic007G205800 Sobic003G202800--Sobic007G205800 Sobic001G056200 Sobic001G056200 Sobic006G088100--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic006G088100--Sobic004G263900 Sobic006G088100--Sobic003G202800 Sobic006G088100--Sobic003G437500 Sobic003G261300 Sobic003G261300 Sobic006G088100--Sobic003G261300 Sobic006G209500 Sobic006G209500 Sobic006G088100--Sobic006G209500 Sobic001G119300 Sobic001G119300 Sobic006G088100--Sobic001G119300 Sobic002G350300 Sobic002G350300 Sobic006G088100--Sobic002G350300 Sobic006G088100--Sobic006G128800 Sobic002G320500 Sobic002G320500 Sobic001G107500--Sobic002G320500 Sobic006G133800 Sobic006G133800 Sobic001G107500--Sobic006G133800 Sobic002G157000 Sobic002G157000 Sobic001G107500--Sobic002G157000 Sobic009G065100 Sobic009G065100 Sobic001G107500--Sobic009G065100 Sobic001G090400 Sobic001G090400 Sobic001G107500--Sobic001G090400 Sobic010G056200 Sobic010G056200 Sobic001G107500--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic001G107500--Sobic001G497300 Sobic007G104800 Sobic007G104800 Sobic001G107500--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic001G107500--Sobic004G205600 Sobic009G117400 Sobic009G117400 Sobic004G271900--Sobic009G117400 Sobic004G271900--Sobic007G205800 Sobic004G271900--Sobic008G034600 Sobic010G263800 Sobic010G263800 Sobic004G271900--Sobic010G263800 Sobic003G093600 Sobic003G093600 Sobic004G271900--Sobic003G093600 Sobic004G256600 Sobic004G256600 Sobic004G271900--Sobic004G256600 Sobic004G271900--Sobic007G011400 Sobic003G258400 Sobic003G258400 Sobic004G271900--Sobic003G258400 Sobic009G117300 Sobic009G117300 Sobic004G271900--Sobic009G117300 Sobic008G034600--Sobic007G205800 Sobic008G034600--Sobic007G011400 Sobic008G034600--Sobic010G263800 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic008G034600--Sobic002G421700 Sobic009G022200 Sobic009G022200 Sobic008G034600--Sobic009G022200 Sobic007G224900 Sobic007G224900 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic001G028400 Sobic001G028400 Sobic003G437500--Sobic001G028400 Sobic003G437500--Sobic001G056200 Sobic003G437500--Sobic006G088100 Sobic003G437500--Sobic003G202800 Sobic006G092800 Sobic006G092800 Sobic003G437500--Sobic006G092800 Sobic004G013600 Sobic004G013600 Sobic003G437500--Sobic004G013600 Sobic007G088900 Sobic007G088900 Sobic003G437500--Sobic007G088900 Sobic003G437500--Sobic004G263900 Sobic003G359300 Sobic003G359300 Sobic003G437500--Sobic003G359300 Sobic003G205501 Sobic003G205501 Sobic006G128800--Sobic003G205501 Sobic010G174800 Sobic010G174800 Sobic006G128800--Sobic010G174800 Sobic004G349900 Sobic004G349900 Sobic006G128800--Sobic004G349900 Sobic006G128800--Sobic002G157300 Sobic006G128800--Sobic003G261300 Sobic003G248500 Sobic003G248500 Sobic006G128800--Sobic003G248500 Sobic006G130200 Sobic006G130200 Sobic006G128800--Sobic006G130200 Sobic001G514000 Sobic001G514000 Sobic006G128800--Sobic001G514000 Sobic003G008500 Sobic003G008500 Sobic006G128800--Sobic003G008500 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic003G187400 Sobic003G187400 Sobic002G157300--Sobic003G187400 Sobic002G157300--Sobic007G011400 Sobic005G149500 Sobic005G149500 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic007G185900 Sobic007G185900 Sobic002G157300--Sobic007G185900 Sobic002G157300--Sobic010G263800 Sobic006G173100 Sobic006G173100 Sobic002G157300--Sobic006G173100 Sobic007G011400--Sobic001G094000 Sobic007G011400--Sobic007G205800 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic007G011400--Sobic008G034600 Sobic007G205800--Sobic007G011400 Sobic009G087800 Sobic009G087800 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.