Gene annotation
Transcriptome id Sobic.002G197100.3,Sobic.002G197100.1,Sobic.002G197100.2
Synonym Sb02g024340, RAD23D
Functional annotation RAD23 DNA repair protein, putative, expressed
UniProt A0A1B6QCE9 , A0A1B6QCE6
Pfam PF00240 PF09280 PF00627
Panther DB PTHR10621 PTHR10621:SF7
NCBI CDD KOG0011; Nucleotide excision repair factor NEF2, RAD23 component
KEGG Orthology K10839; RAD23, UV excision repair protein RAD23
Gene Ontology GO:0005515; protein binding GO:0006289nucleotide-excision repair GO:0003684damaged DNA binding


Orthologs (automatic annotation)
TAIR AT3G02540 : Rad23 UV excision repair protein family
RAP-DB (Rice) LOC_Os09g24200.2 : RAD23 DNA repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a013881 , Zm00025a046929
Brachypodium -
Barley HORVU5Hr1G060920.6 , HORVU5Hr1G060920.7 , HORVU5Hr1G060920.4 , HORVU5Hr1G060920.5 , HORVU5Hr1G060920.2 , HORVU5Hr1G060920.3 , HORVU5Hr1G060920.1 , HORVU5Hr1G060920.8 , HORVU5Hr1G060920.9 , HORVU5Hr1G060920.14 , HORVU5Hr1G060920.15 , HORVU5Hr1G060920.10 , HORVU5Hr1G060920.11 , HORVU5Hr1G060920.12 , HORVU5Hr1G060920.13
Wheat TraesCS5A02G204200 , TraesCS5A02G204200 , TraesCS5A02G204200 , TraesCS5D02G211900 , TraesCS5D02G211900 , TraesCS5D02G211900 , TraesCS5D02G211900 , TraesCS5B02G204000 , TraesCS5B02G204000 , TraesCS5B02G204000
Populus -


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cDNA sequences
Sobic.002G197100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G007300 expressed protein -
2 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
3 Sobic.004G345700 TBC domain containing protein, expressed -
4 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
5 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
6 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
7 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
8 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -
9 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
10 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
11 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
12 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
13 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
14 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
15 Sobic.005G015900 dnaJ domain containing protein, expressed -
16 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
17 Sobic.006G128800 expressed protein -
18 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
19 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
20 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6


Gene co-expression network
sample Sobic002G197100 Sobic002G197100 Sobic004G007300 Sobic004G007300 Sobic002G197100--Sobic004G007300 Sobic006G173100 Sobic006G173100 Sobic002G197100--Sobic006G173100 Sobic004G345700 Sobic004G345700 Sobic002G197100--Sobic004G345700 Sobic001G176200 Sobic001G176200 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic001G425000 Sobic001G425000 Sobic002G197100--Sobic001G425000 Sobic003G248500 Sobic003G248500 Sobic002G197100--Sobic003G248500 Sobic001G514000 Sobic001G514000 Sobic002G197100--Sobic001G514000 Sobic002G370900 Sobic002G370900 Sobic002G197100--Sobic002G370900 Sobic004G007300--Sobic002G197100 Sobic001G408700 Sobic001G408700 Sobic004G007300--Sobic001G408700 Sobic004G007300--Sobic004G345700 Sobic006G092800 Sobic006G092800 Sobic004G007300--Sobic006G092800 Sobic004G350100 Sobic004G350100 Sobic004G007300--Sobic004G350100 Sobic004G007300--Sobic006G173100 Sobic004G283000 Sobic004G283000 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic001G056200 Sobic001G056200 Sobic004G007300--Sobic001G056200 Sobic006G173100--Sobic001G090400 Sobic002G157300 Sobic002G157300 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic001G512700 Sobic001G512700 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic006G173100--Sobic002G370900 Sobic004G345700--Sobic002G197100 Sobic004G345700--Sobic001G514000 Sobic004G345700--Sobic004G007300 Sobic004G345700--Sobic001G408700 Sobic005G154500 Sobic005G154500 Sobic004G345700--Sobic005G154500 Sobic004G345700--Sobic001G176200 Sobic004G345700--Sobic006G092800 Sobic003G205501 Sobic003G205501 Sobic004G345700--Sobic003G205501 Sobic010G245000 Sobic010G245000 Sobic004G345700--Sobic010G245000 Sobic001G176200--Sobic001G090400 Sobic001G176200--Sobic002G370900 Sobic001G176200--Sobic002G197100 Sobic001G176200--Sobic005G154500 Sobic005G015900 Sobic005G015900 Sobic001G176200--Sobic005G015900 Sobic001G176200--Sobic004G345700 Sobic001G176200--Sobic006G173100 Sobic001G176200--Sobic010G245000 Sobic002G320500 Sobic002G320500 Sobic001G176200--Sobic002G320500 Sobic008G067600 Sobic008G067600 Sobic001G090400--Sobic008G067600 Sobic001G090400--Sobic006G173100 Sobic004G057400 Sobic004G057400 Sobic001G090400--Sobic004G057400 Sobic001G090400--Sobic001G176200 Sobic001G090400--Sobic002G320500 Sobic009G000500 Sobic009G000500 Sobic001G090400--Sobic009G000500 Sobic001G090400--Sobic002G157300 Sobic004G205600 Sobic004G205600 Sobic001G090400--Sobic004G205600 Sobic002G248400 Sobic002G248400 Sobic001G090400--Sobic002G248400 Sobic001G425000--Sobic002G197100 Sobic001G425000--Sobic001G176200 Sobic006G046700 Sobic006G046700 Sobic001G425000--Sobic006G046700 Sobic003G445400 Sobic003G445400 Sobic001G425000--Sobic003G445400 Sobic001G425000--Sobic005G015900 Sobic008G152900 Sobic008G152900 Sobic001G425000--Sobic008G152900 Sobic001G202266 Sobic001G202266 Sobic001G425000--Sobic001G202266 Sobic006G186400 Sobic006G186400 Sobic001G425000--Sobic006G186400 Sobic004G180900 Sobic004G180900 Sobic001G425000--Sobic004G180900 Sobic003G359300 Sobic003G359300 Sobic003G248500--Sobic003G359300 Sobic003G248500--Sobic004G283000 Sobic010G174800 Sobic010G174800 Sobic003G248500--Sobic010G174800 Sobic001G390500 Sobic001G390500 Sobic003G248500--Sobic001G390500 Sobic003G248500--Sobic002G197100 Sobic003G185200 Sobic003G185200 Sobic003G248500--Sobic003G185200 Sobic002G365100 Sobic002G365100 Sobic003G248500--Sobic002G365100 Sobic003G051200 Sobic003G051200 Sobic003G248500--Sobic003G051200 Sobic006G128800 Sobic006G128800 Sobic003G248500--Sobic006G128800 Sobic001G514000--Sobic002G157300 Sobic001G514000--Sobic004G345700 Sobic001G514000--Sobic006G173100 Sobic003G008500 Sobic003G008500 Sobic001G514000--Sobic003G008500 Sobic001G514000--Sobic002G197100 Sobic003G401000 Sobic003G401000 Sobic001G514000--Sobic003G401000 Sobic007G137900 Sobic007G137900 Sobic001G514000--Sobic007G137900 Sobic001G514000--Sobic006G128800 Sobic001G514000--Sobic004G007300 Sobic002G370900--Sobic001G176200 Sobic006G082900 Sobic006G082900 Sobic002G370900--Sobic006G082900 Sobic002G370900--Sobic004G067700 Sobic002G370900--Sobic006G173100 Sobic002G370900--Sobic003G008500 Sobic002G260400 Sobic002G260400 Sobic002G370900--Sobic002G260400 Sobic002G310200 Sobic002G310200 Sobic002G370900--Sobic002G310200 Sobic002G370900--Sobic002G197100 Sobic002G370900--Sobic004G345700
Octagon: transcription factors


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