Gene annotation
Transcriptome id Sobic.004G345700.2
Synonym Sb04g037270
Functional annotation TBC domain containing protein, expressed
UniProt A0A194YTB0
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF26
NCBI CDD KOG1092; Ypt/Rab-specific GTPase-activating protein GYP1
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G30710 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os09g34040.1 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032796
Brachypodium KQJ98729
Barley HORVU5Hr1G079100.4 , HORVU5Hr1G079100.5 , HORVU5Hr1G079100.2 , HORVU5Hr1G079100.3 , HORVU5Hr1G079100.1 , HORVU5Hr1G079100.6 , HORVU5Hr1G079100.7
Wheat TraesCS5D02G308400 , TraesCS5A02G299600 , TraesCS5B02G301700
Populus -


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cDNA sequences
Sobic.004G345700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
2 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -
3 Sobic.004G007300 expressed protein -
4 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
5 Sobic.005G154500 OsFBX407 - F-box domain containing protein, expressed -
6 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
7 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
8 Sobic.003G205501 - -
9 Sobic.010G245000 DTW domain containing protein, putative, expressed -
10 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
11 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
12 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
13 Sobic.006G202200 ENTH domain containing protein, expressed K12471: epsin
14 Sobic.006G267300 expressed protein -
15 Sobic.006G082900 expressed protein -
16 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
17 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
18 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
19 Sobic.003G187200 phox domain-containing protein, putative, expressed -
20 Sobic.006G128800 expressed protein -


Gene co-expression network
sample Sobic004G345700 Sobic004G345700 Sobic002G197100 Sobic002G197100 Sobic004G345700--Sobic002G197100 Sobic001G514000 Sobic001G514000 Sobic004G345700--Sobic001G514000 Sobic004G007300 Sobic004G007300 Sobic004G345700--Sobic004G007300 Sobic001G408700 Sobic001G408700 Sobic004G345700--Sobic001G408700 Sobic005G154500 Sobic005G154500 Sobic004G345700--Sobic005G154500 Sobic001G176200 Sobic001G176200 Sobic004G345700--Sobic001G176200 Sobic006G092800 Sobic006G092800 Sobic004G345700--Sobic006G092800 Sobic003G205501 Sobic003G205501 Sobic004G345700--Sobic003G205501 Sobic010G245000 Sobic010G245000 Sobic004G345700--Sobic010G245000 Sobic002G197100--Sobic004G007300 Sobic006G173100 Sobic006G173100 Sobic002G197100--Sobic006G173100 Sobic002G197100--Sobic004G345700 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic001G425000 Sobic001G425000 Sobic002G197100--Sobic001G425000 Sobic003G248500 Sobic003G248500 Sobic002G197100--Sobic003G248500 Sobic002G197100--Sobic001G514000 Sobic002G370900 Sobic002G370900 Sobic002G197100--Sobic002G370900 Sobic002G157300 Sobic002G157300 Sobic001G514000--Sobic002G157300 Sobic001G514000--Sobic004G345700 Sobic001G514000--Sobic006G173100 Sobic003G008500 Sobic003G008500 Sobic001G514000--Sobic003G008500 Sobic001G514000--Sobic002G197100 Sobic003G401000 Sobic003G401000 Sobic001G514000--Sobic003G401000 Sobic007G137900 Sobic007G137900 Sobic001G514000--Sobic007G137900 Sobic006G128800 Sobic006G128800 Sobic001G514000--Sobic006G128800 Sobic001G514000--Sobic004G007300 Sobic004G007300--Sobic002G197100 Sobic004G007300--Sobic001G408700 Sobic004G007300--Sobic004G345700 Sobic004G007300--Sobic006G092800 Sobic004G350100 Sobic004G350100 Sobic004G007300--Sobic004G350100 Sobic004G007300--Sobic006G173100 Sobic004G283000 Sobic004G283000 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic001G056200 Sobic001G056200 Sobic004G007300--Sobic001G056200 Sobic001G408700--Sobic003G205501 Sobic001G408700--Sobic004G007300 Sobic001G408700--Sobic004G345700 Sobic001G408700--Sobic001G056200 Sobic007G118200 Sobic007G118200 Sobic001G408700--Sobic007G118200 Sobic006G267300 Sobic006G267300 Sobic001G408700--Sobic006G267300 Sobic001G408700--Sobic002G197100 Sobic001G408700--Sobic004G283000 Sobic001G408700--Sobic010G245000 Sobic005G154500--Sobic001G176200 Sobic005G154500--Sobic004G345700 Sobic003G241200 Sobic003G241200 Sobic005G154500--Sobic003G241200 Sobic005G154500--Sobic010G245000 Sobic008G149800 Sobic008G149800 Sobic005G154500--Sobic008G149800 Sobic008G173100 Sobic008G173100 Sobic005G154500--Sobic008G173100 Sobic005G015900 Sobic005G015900 Sobic005G154500--Sobic005G015900 Sobic002G357700 Sobic002G357700 Sobic005G154500--Sobic002G357700 Sobic006G116100 Sobic006G116100 Sobic005G154500--Sobic006G116100 Sobic001G176200--Sobic001G090400 Sobic001G176200--Sobic002G370900 Sobic001G176200--Sobic002G197100 Sobic001G176200--Sobic005G154500 Sobic001G176200--Sobic005G015900 Sobic001G176200--Sobic004G345700 Sobic001G176200--Sobic006G173100 Sobic001G176200--Sobic010G245000 Sobic002G320500 Sobic002G320500 Sobic001G176200--Sobic002G320500 Sobic006G092800--Sobic004G007300 Sobic006G092800--Sobic004G345700 Sobic007G088900 Sobic007G088900 Sobic006G092800--Sobic007G088900 Sobic006G092800--Sobic001G056200 Sobic006G092800--Sobic006G128800 Sobic006G092800--Sobic002G197100 Sobic006G254600 Sobic006G254600 Sobic006G092800--Sobic006G254600 Sobic006G092800--Sobic001G408700 Sobic003G437500 Sobic003G437500 Sobic006G092800--Sobic003G437500 Sobic003G205501--Sobic001G408700 Sobic003G205501--Sobic006G128800 Sobic003G205501--Sobic004G345700 Sobic003G205501--Sobic006G267300 Sobic010G202600 Sobic010G202600 Sobic003G205501--Sobic010G202600 Sobic003G205501--Sobic010G245000 Sobic008G127400 Sobic008G127400 Sobic003G205501--Sobic008G127400 Sobic008G058800 Sobic008G058800 Sobic003G205501--Sobic008G058800 Sobic003G205501--Sobic003G248500 Sobic002G056701 Sobic002G056701 Sobic010G245000--Sobic002G056701 Sobic010G245000--Sobic001G176200 Sobic010G245000--Sobic004G345700 Sobic004G084300 Sobic004G084300 Sobic010G245000--Sobic004G084300 Sobic010G245000--Sobic005G154500 Sobic002G264200 Sobic002G264200 Sobic010G245000--Sobic002G264200 Sobic010G245000--Sobic008G173100 Sobic010G245000--Sobic003G241200 Sobic002G260400 Sobic002G260400 Sobic010G245000--Sobic002G260400
Octagon: transcription factors


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