Gene annotation
Transcriptome id Sobic.002G370900.1
Synonym WAV2, Sb02g038970
Functional annotation OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed
UniProt C5XDY6
Pfam PF12695
Panther DB PTHR12277
NCBI CDD KOG4391; Predicted alpha/beta hydrolase BEM46
KEGG Orthology K06889; uncharacterized protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G20520 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os07g41730.1 : OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a015186 , Zm00025a048721
Brachypodium KQK15298 , KQK15299
Barley HORVU2Hr1G032060.3 , HORVU2Hr1G032060.4 , HORVU2Hr1G032060.2 , HORVU2Hr1G032060.1 , HORVU2Hr1G032060.7 , HORVU2Hr1G032060.6 , HORVU2Hr1G032060.5
Wheat TraesCS2B02G198600 , TraesCS2D02G179500 , TraesCS2D02G179500 , TraesCS2D02G179500 , TraesCS2A02G172400 , TraesCS2A02G172400 , TraesCS2A02G172400 , TraesCS2B02G198600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G370900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
2 Sobic.006G082900 expressed protein -
3 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
4 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
5 Sobic.003G008500 VHS and GAT domain containing protein, expressed -
6 Sobic.002G260400 - -
7 Sobic.002G310200 expressed protein -
8 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
9 Sobic.004G345700 TBC domain containing protein, expressed -
10 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
11 Sobic.010G245000 DTW domain containing protein, putative, expressed -
12 Sobic.004G007300 expressed protein -
13 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
14 Sobic.008G153000 MATH domain containing protein, expressed -
15 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -
16 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
17 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
18 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
19 Sobic.005G154500 OsFBX407 - F-box domain containing protein, expressed -
20 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein


Gene co-expression network
sample Sobic002G370900 Sobic002G370900 Sobic001G176200 Sobic001G176200 Sobic002G370900--Sobic001G176200 Sobic006G082900 Sobic006G082900 Sobic002G370900--Sobic006G082900 Sobic004G067700 Sobic004G067700 Sobic002G370900--Sobic004G067700 Sobic006G173100 Sobic006G173100 Sobic002G370900--Sobic006G173100 Sobic003G008500 Sobic003G008500 Sobic002G370900--Sobic003G008500 Sobic002G260400 Sobic002G260400 Sobic002G370900--Sobic002G260400 Sobic002G310200 Sobic002G310200 Sobic002G370900--Sobic002G310200 Sobic002G197100 Sobic002G197100 Sobic002G370900--Sobic002G197100 Sobic004G345700 Sobic004G345700 Sobic002G370900--Sobic004G345700 Sobic001G090400 Sobic001G090400 Sobic001G176200--Sobic001G090400 Sobic001G176200--Sobic002G370900 Sobic001G176200--Sobic002G197100 Sobic005G154500 Sobic005G154500 Sobic001G176200--Sobic005G154500 Sobic005G015900 Sobic005G015900 Sobic001G176200--Sobic005G015900 Sobic001G176200--Sobic004G345700 Sobic001G176200--Sobic006G173100 Sobic010G245000 Sobic010G245000 Sobic001G176200--Sobic010G245000 Sobic002G320500 Sobic002G320500 Sobic001G176200--Sobic002G320500 Sobic006G082900--Sobic002G370900 Sobic006G082900--Sobic003G008500 Sobic006G202200 Sobic006G202200 Sobic006G082900--Sobic006G202200 Sobic004G007300 Sobic004G007300 Sobic006G082900--Sobic004G007300 Sobic006G082900--Sobic004G345700 Sobic008G149800 Sobic008G149800 Sobic006G082900--Sobic008G149800 Sobic006G082900--Sobic006G173100 Sobic003G401000 Sobic003G401000 Sobic006G082900--Sobic003G401000 Sobic006G195700 Sobic006G195700 Sobic006G082900--Sobic006G195700 Sobic001G114000 Sobic001G114000 Sobic004G067700--Sobic001G114000 Sobic004G067700--Sobic006G173100 Sobic004G067700--Sobic002G370900 Sobic001G512700 Sobic001G512700 Sobic004G067700--Sobic001G512700 Sobic007G217000 Sobic007G217000 Sobic004G067700--Sobic007G217000 Sobic009G126400 Sobic009G126400 Sobic004G067700--Sobic009G126400 Sobic005G045300 Sobic005G045300 Sobic004G067700--Sobic005G045300 Sobic004G067700--Sobic003G008500 Sobic004G067700--Sobic002G310200 Sobic006G173100--Sobic001G090400 Sobic002G157300 Sobic002G157300 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic006G173100--Sobic001G512700 Sobic006G173100--Sobic004G067700 Sobic006G173100--Sobic002G370900 Sobic003G008500--Sobic002G157300 Sobic003G008500--Sobic006G082900 Sobic003G008500--Sobic002G370900 Sobic003G008500--Sobic004G067700 Sobic003G008500--Sobic003G401000 Sobic001G514000 Sobic001G514000 Sobic003G008500--Sobic001G514000 Sobic003G008500--Sobic006G173100 Sobic003G008500--Sobic006G202200 Sobic006G128800 Sobic006G128800 Sobic003G008500--Sobic006G128800 Sobic008G173100 Sobic008G173100 Sobic002G260400--Sobic008G173100 Sobic002G056701 Sobic002G056701 Sobic002G260400--Sobic002G056701 Sobic002G063900 Sobic002G063900 Sobic002G260400--Sobic002G063900 Sobic002G260400--Sobic002G370900 Sobic006G116100 Sobic006G116100 Sobic002G260400--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic002G260400--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic002G260400--Sobic010G236400 Sobic002G083500 Sobic002G083500 Sobic002G260400--Sobic002G083500 Sobic002G260400--Sobic010G245000 Sobic001G222500 Sobic001G222500 Sobic002G310200--Sobic001G222500 Sobic008G047800 Sobic008G047800 Sobic002G310200--Sobic008G047800 Sobic002G310200--Sobic007G217000 Sobic004G084300 Sobic004G084300 Sobic002G310200--Sobic004G084300 Sobic007G096000 Sobic007G096000 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic008G067600 Sobic008G067600 Sobic002G310200--Sobic008G067600 Sobic002G310200--Sobic004G067700 Sobic002G197100--Sobic004G007300 Sobic002G197100--Sobic006G173100 Sobic002G197100--Sobic004G345700 Sobic002G197100--Sobic001G176200 Sobic002G197100--Sobic001G090400 Sobic001G425000 Sobic001G425000 Sobic002G197100--Sobic001G425000 Sobic003G248500 Sobic003G248500 Sobic002G197100--Sobic003G248500 Sobic002G197100--Sobic001G514000 Sobic002G197100--Sobic002G370900 Sobic004G345700--Sobic002G197100 Sobic004G345700--Sobic001G514000 Sobic004G345700--Sobic004G007300 Sobic001G408700 Sobic001G408700 Sobic004G345700--Sobic001G408700 Sobic004G345700--Sobic005G154500 Sobic004G345700--Sobic001G176200 Sobic006G092800 Sobic006G092800 Sobic004G345700--Sobic006G092800 Sobic003G205501 Sobic003G205501 Sobic004G345700--Sobic003G205501 Sobic004G345700--Sobic010G245000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.