Gene annotation
Transcriptome id Sobic.003G008500.1
Synonym Sb03g000910
Functional annotation VHS and GAT domain containing protein, expressed
UniProt C5XJP5
Pfam PF03127 PF00790
Panther DB PTHR13856 PTHR13856:SF98
NCBI CDD KOG1087; Cytosolic sorting protein GGA2/TOM1
KEGG Orthology -
Gene Ontology GO:0006886; intracellular protein transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT4G32760 : ENTH/VHS/GAT family protein
RAP-DB (Rice) LOC_Os01g12880.1 : VHS and GAT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035987 , Zm00025a022830 , Zm00025a019834
Brachypodium KQK03409 , PNT70205 , KQK03412 , KQK03411 , KQK03410 , KQK18282 , KQK18283 , KQK18281 , KQK18284
Barley HORVU3Hr1G031360.2 , HORVU3Hr1G031360.4 , HORVU3Hr1G031360.6 , HORVU3Hr1G031360.7 , HORVU3Hr1G031360.8 , HORVU3Hr1G031360.9 , HORVU3Hr1G031360.10 , HORVU3Hr1G031360.11
Wheat TraesCS3A02G154000 , TraesCS3A02G154000 , TraesCS3D02G161400 , TraesCS3D02G161400 , TraesCS3B02G180600 , TraesCS7D02G338200 , TraesCS7D02G338200 , TraesCS7D02G338200 , TraesCS7B02G242700 , TraesCS7B02G242700 , TraesCS7A02G341400 , TraesCS7A02G341400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
2 Sobic.006G082900 expressed protein -
3 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
4 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
5 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
6 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -
7 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
8 Sobic.006G202200 ENTH domain containing protein, expressed K12471: epsin
9 Sobic.006G128800 expressed protein -
10 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
11 Sobic.008G042600 N-acetylglucosaminyltransferase I, putative, expressed K00726: alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
12 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
13 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
14 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
15 Sobic.004G345700 TBC domain containing protein, expressed -
16 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
17 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
18 Sobic.001G296500 ARABIDILLO-1, putative, expressed -
19 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
20 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4


Gene co-expression network
sample Sobic003G008500 Sobic003G008500 Sobic002G157300 Sobic002G157300 Sobic003G008500--Sobic002G157300 Sobic006G082900 Sobic006G082900 Sobic003G008500--Sobic006G082900 Sobic002G370900 Sobic002G370900 Sobic003G008500--Sobic002G370900 Sobic004G067700 Sobic004G067700 Sobic003G008500--Sobic004G067700 Sobic003G401000 Sobic003G401000 Sobic003G008500--Sobic003G401000 Sobic001G514000 Sobic001G514000 Sobic003G008500--Sobic001G514000 Sobic006G173100 Sobic006G173100 Sobic003G008500--Sobic006G173100 Sobic006G202200 Sobic006G202200 Sobic003G008500--Sobic006G202200 Sobic006G128800 Sobic006G128800 Sobic003G008500--Sobic006G128800 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic003G187400 Sobic003G187400 Sobic002G157300--Sobic003G187400 Sobic007G011400 Sobic007G011400 Sobic002G157300--Sobic007G011400 Sobic005G149500 Sobic005G149500 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic007G185900 Sobic007G185900 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic002G157300--Sobic006G173100 Sobic006G082900--Sobic002G370900 Sobic006G082900--Sobic003G008500 Sobic006G082900--Sobic006G202200 Sobic004G007300 Sobic004G007300 Sobic006G082900--Sobic004G007300 Sobic004G345700 Sobic004G345700 Sobic006G082900--Sobic004G345700 Sobic008G149800 Sobic008G149800 Sobic006G082900--Sobic008G149800 Sobic006G082900--Sobic006G173100 Sobic006G082900--Sobic003G401000 Sobic006G195700 Sobic006G195700 Sobic006G082900--Sobic006G195700 Sobic001G176200 Sobic001G176200 Sobic002G370900--Sobic001G176200 Sobic002G370900--Sobic006G082900 Sobic002G370900--Sobic004G067700 Sobic002G370900--Sobic006G173100 Sobic002G370900--Sobic003G008500 Sobic002G260400 Sobic002G260400 Sobic002G370900--Sobic002G260400 Sobic002G310200 Sobic002G310200 Sobic002G370900--Sobic002G310200 Sobic002G197100 Sobic002G197100 Sobic002G370900--Sobic002G197100 Sobic002G370900--Sobic004G345700 Sobic001G114000 Sobic001G114000 Sobic004G067700--Sobic001G114000 Sobic004G067700--Sobic006G173100 Sobic004G067700--Sobic002G370900 Sobic001G512700 Sobic001G512700 Sobic004G067700--Sobic001G512700 Sobic007G217000 Sobic007G217000 Sobic004G067700--Sobic007G217000 Sobic009G126400 Sobic009G126400 Sobic004G067700--Sobic009G126400 Sobic005G045300 Sobic005G045300 Sobic004G067700--Sobic005G045300 Sobic004G067700--Sobic003G008500 Sobic004G067700--Sobic002G310200 Sobic002G158700 Sobic002G158700 Sobic003G401000--Sobic002G158700 Sobic003G401000--Sobic003G187400 Sobic003G401000--Sobic002G157300 Sobic009G257800 Sobic009G257800 Sobic003G401000--Sobic009G257800 Sobic001G155000 Sobic001G155000 Sobic003G401000--Sobic001G155000 Sobic009G040700 Sobic009G040700 Sobic003G401000--Sobic009G040700 Sobic003G401000--Sobic001G094000 Sobic006G028200 Sobic006G028200 Sobic003G401000--Sobic006G028200 Sobic003G401000--Sobic003G008500 Sobic001G514000--Sobic002G157300 Sobic001G514000--Sobic004G345700 Sobic001G514000--Sobic006G173100 Sobic001G514000--Sobic003G008500 Sobic001G514000--Sobic002G197100 Sobic001G514000--Sobic003G401000 Sobic007G137900 Sobic007G137900 Sobic001G514000--Sobic007G137900 Sobic001G514000--Sobic006G128800 Sobic001G514000--Sobic004G007300 Sobic001G090400 Sobic001G090400 Sobic006G173100--Sobic001G090400 Sobic006G173100--Sobic002G157300 Sobic006G173100--Sobic003G187400 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic006G173100--Sobic001G512700 Sobic006G173100--Sobic004G067700 Sobic006G173100--Sobic002G370900 Sobic006G202200--Sobic003G008500 Sobic006G202200--Sobic004G345700 Sobic006G202200--Sobic006G082900 Sobic009G229600 Sobic009G229600 Sobic006G202200--Sobic009G229600 Sobic001G518400 Sobic001G518400 Sobic006G202200--Sobic001G518400 Sobic009G126600 Sobic009G126600 Sobic006G202200--Sobic009G126600 Sobic006G202200--Sobic003G401000 Sobic009G214900 Sobic009G214900 Sobic006G202200--Sobic009G214900 Sobic006G202200--Sobic008G149800 Sobic003G205501 Sobic003G205501 Sobic006G128800--Sobic003G205501 Sobic010G174800 Sobic010G174800 Sobic006G128800--Sobic010G174800 Sobic004G349900 Sobic004G349900 Sobic006G128800--Sobic004G349900 Sobic006G128800--Sobic002G157300 Sobic003G261300 Sobic003G261300 Sobic006G128800--Sobic003G261300 Sobic003G248500 Sobic003G248500 Sobic006G128800--Sobic003G248500 Sobic006G130200 Sobic006G130200 Sobic006G128800--Sobic006G130200 Sobic006G128800--Sobic001G514000 Sobic006G128800--Sobic003G008500
Octagon: transcription factors


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