Gene annotation
Transcriptome id Sobic.006G082900.1
Synonym Sb06g016950
Functional annotation expressed protein
UniProt C5Y8N7
Pfam -
Panther DB PTHR35749 PTHR35749:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17010 : -
RAP-DB (Rice) LOC_Os02g29220.1 : expressed protein
MaizeGDB (Corn) Zm00025a056074
Brachypodium -
Barley -
Wheat TraesCS5D02G283500 , TraesCS5A02G276100 , TraesCS5B02G275500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G082900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
2 Sobic.003G008500 VHS and GAT domain containing protein, expressed -
3 Sobic.006G202200 ENTH domain containing protein, expressed K12471: epsin
4 Sobic.004G007300 expressed protein -
5 Sobic.004G345700 TBC domain containing protein, expressed -
6 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
7 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
8 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
9 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
10 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
11 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
12 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
13 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
14 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
15 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -
16 Sobic.005G154500 OsFBX407 - F-box domain containing protein, expressed -
17 Sobic.001G296500 ARABIDILLO-1, putative, expressed -
18 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
19 Sobic.002G164300 ZOS9-03 - C2H2 zinc finger protein, expressed -
20 Sobic.003G187200 phox domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G082900 Sobic006G082900 Sobic002G370900 Sobic002G370900 Sobic006G082900--Sobic002G370900 Sobic003G008500 Sobic003G008500 Sobic006G082900--Sobic003G008500 Sobic006G202200 Sobic006G202200 Sobic006G082900--Sobic006G202200 Sobic004G007300 Sobic004G007300 Sobic006G082900--Sobic004G007300 Sobic004G345700 Sobic004G345700 Sobic006G082900--Sobic004G345700 Sobic008G149800 Sobic008G149800 Sobic006G082900--Sobic008G149800 Sobic006G173100 Sobic006G173100 Sobic006G082900--Sobic006G173100 Sobic003G401000 Sobic003G401000 Sobic006G082900--Sobic003G401000 Sobic006G195700 Sobic006G195700 Sobic006G082900--Sobic006G195700 Sobic001G176200 Sobic001G176200 Sobic002G370900--Sobic001G176200 Sobic002G370900--Sobic006G082900 Sobic004G067700 Sobic004G067700 Sobic002G370900--Sobic004G067700 Sobic002G370900--Sobic006G173100 Sobic002G370900--Sobic003G008500 Sobic002G260400 Sobic002G260400 Sobic002G370900--Sobic002G260400 Sobic002G310200 Sobic002G310200 Sobic002G370900--Sobic002G310200 Sobic002G197100 Sobic002G197100 Sobic002G370900--Sobic002G197100 Sobic002G370900--Sobic004G345700 Sobic002G157300 Sobic002G157300 Sobic003G008500--Sobic002G157300 Sobic003G008500--Sobic006G082900 Sobic003G008500--Sobic002G370900 Sobic003G008500--Sobic004G067700 Sobic003G008500--Sobic003G401000 Sobic001G514000 Sobic001G514000 Sobic003G008500--Sobic001G514000 Sobic003G008500--Sobic006G173100 Sobic003G008500--Sobic006G202200 Sobic006G128800 Sobic006G128800 Sobic003G008500--Sobic006G128800 Sobic006G202200--Sobic003G008500 Sobic006G202200--Sobic004G345700 Sobic006G202200--Sobic006G082900 Sobic009G229600 Sobic009G229600 Sobic006G202200--Sobic009G229600 Sobic001G518400 Sobic001G518400 Sobic006G202200--Sobic001G518400 Sobic009G126600 Sobic009G126600 Sobic006G202200--Sobic009G126600 Sobic006G202200--Sobic003G401000 Sobic009G214900 Sobic009G214900 Sobic006G202200--Sobic009G214900 Sobic006G202200--Sobic008G149800 Sobic004G007300--Sobic002G197100 Sobic001G408700 Sobic001G408700 Sobic004G007300--Sobic001G408700 Sobic004G007300--Sobic004G345700 Sobic006G092800 Sobic006G092800 Sobic004G007300--Sobic006G092800 Sobic004G350100 Sobic004G350100 Sobic004G007300--Sobic004G350100 Sobic004G007300--Sobic006G173100 Sobic004G283000 Sobic004G283000 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic001G056200 Sobic001G056200 Sobic004G007300--Sobic001G056200 Sobic004G345700--Sobic002G197100 Sobic004G345700--Sobic001G514000 Sobic004G345700--Sobic004G007300 Sobic004G345700--Sobic001G408700 Sobic005G154500 Sobic005G154500 Sobic004G345700--Sobic005G154500 Sobic004G345700--Sobic001G176200 Sobic004G345700--Sobic006G092800 Sobic003G205501 Sobic003G205501 Sobic004G345700--Sobic003G205501 Sobic010G245000 Sobic010G245000 Sobic004G345700--Sobic010G245000 Sobic006G116100 Sobic006G116100 Sobic008G149800--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic008G149800--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic008G149800--Sobic007G061700 Sobic002G357700 Sobic002G357700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic004G246100 Sobic004G246100 Sobic008G149800--Sobic004G246100 Sobic002G158700 Sobic002G158700 Sobic008G149800--Sobic002G158700 Sobic008G149800--Sobic005G154500 Sobic001G155000 Sobic001G155000 Sobic008G149800--Sobic001G155000 Sobic001G090400 Sobic001G090400 Sobic006G173100--Sobic001G090400 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic001G512700 Sobic001G512700 Sobic006G173100--Sobic001G512700 Sobic006G173100--Sobic004G067700 Sobic006G173100--Sobic002G370900 Sobic003G401000--Sobic002G158700 Sobic003G401000--Sobic003G187400 Sobic003G401000--Sobic002G157300 Sobic009G257800 Sobic009G257800 Sobic003G401000--Sobic009G257800 Sobic003G401000--Sobic001G155000 Sobic009G040700 Sobic009G040700 Sobic003G401000--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G401000--Sobic001G094000 Sobic006G028200 Sobic006G028200 Sobic003G401000--Sobic006G028200 Sobic003G401000--Sobic003G008500 Sobic010G204400 Sobic010G204400 Sobic006G195700--Sobic010G204400 Sobic009G245800 Sobic009G245800 Sobic006G195700--Sobic009G245800 Sobic010G236400 Sobic010G236400 Sobic006G195700--Sobic010G236400 Sobic002G056701 Sobic002G056701 Sobic006G195700--Sobic002G056701 Sobic006G195700--Sobic002G310200 Sobic006G195700--Sobic002G260400 Sobic006G195700--Sobic010G245000 Sobic006G195700--Sobic006G173100 Sobic003G187500 Sobic003G187500 Sobic006G195700--Sobic003G187500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.