Gene annotation
Transcriptome id Sobic.001G425000.1
Synonym TOPP4, Sb01g039930
Functional annotation Ser/Thr protein phosphatase family protein, putative, expressed
UniProt C5WQ33
Pfam PF16891 PF00149
Panther DB PTHR11668 PTHR11668:SF259
NCBI CDD -
KEGG Orthology K06269; serine/threonine-protein phosphatase PP1 catalytic subunit
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT2G39840 : type one serine/threonine protein phosphatase 4
RAP-DB (Rice) LOC_Os03g16110.3 : Ser/Thr protein phosphatase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a052780 , Zm00025a001774
Brachypodium KQK01402 , KQK01403 , KQK01405 , KQK19467 , KQK01404 , KQK22397 , KQK22396
Barley HORVU7Hr1G026400.1 , HORVU4Hr1G060490.2 , HORVU4Hr1G060490.1 , HORVU4Hr1G060530.1 , HORVU4Hr1G060530.2
Wheat TraesCS7B02G025800 , TraesCS4A02G093600 , TraesCS7D02G124400 , TraesCS4B02G210800 , TraesCS7A02G126500 , TraesCS4D02G211500
Populus PNT19417 , PNT19418 , PNT56434 , PNT56433


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cDNA sequences
Sobic.001G425000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
2 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
3 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
4 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
5 Sobic.005G015900 dnaJ domain containing protein, expressed -
6 Sobic.008G152900 MATH domain containing protein, expressed -
7 Sobic.001G202266 - -
8 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
9 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
10 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
11 Sobic.004G031700 expressed protein -
12 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
13 Sobic.008G073000 expressed protein -
14 Sobic.006G130200 expressed protein -
15 Sobic.009G017200 transporter family protein, putative, expressed K15276: SLC35B2, solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
16 Sobic.001G287800 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
17 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
18 Sobic.007G026000 ATBET9, putative, expressed -
19 Sobic.001G206100 expressed protein -
20 Sobic.005G154500 OsFBX407 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic001G425000 Sobic001G425000 Sobic002G197100 Sobic002G197100 Sobic001G425000--Sobic002G197100 Sobic001G176200 Sobic001G176200 Sobic001G425000--Sobic001G176200 Sobic006G046700 Sobic006G046700 Sobic001G425000--Sobic006G046700 Sobic003G445400 Sobic003G445400 Sobic001G425000--Sobic003G445400 Sobic005G015900 Sobic005G015900 Sobic001G425000--Sobic005G015900 Sobic008G152900 Sobic008G152900 Sobic001G425000--Sobic008G152900 Sobic001G202266 Sobic001G202266 Sobic001G425000--Sobic001G202266 Sobic006G186400 Sobic006G186400 Sobic001G425000--Sobic006G186400 Sobic004G180900 Sobic004G180900 Sobic001G425000--Sobic004G180900 Sobic004G007300 Sobic004G007300 Sobic002G197100--Sobic004G007300 Sobic006G173100 Sobic006G173100 Sobic002G197100--Sobic006G173100 Sobic004G345700 Sobic004G345700 Sobic002G197100--Sobic004G345700 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic002G197100--Sobic001G425000 Sobic003G248500 Sobic003G248500 Sobic002G197100--Sobic003G248500 Sobic001G514000 Sobic001G514000 Sobic002G197100--Sobic001G514000 Sobic002G370900 Sobic002G370900 Sobic002G197100--Sobic002G370900 Sobic001G176200--Sobic001G090400 Sobic001G176200--Sobic002G370900 Sobic001G176200--Sobic002G197100 Sobic005G154500 Sobic005G154500 Sobic001G176200--Sobic005G154500 Sobic001G176200--Sobic005G015900 Sobic001G176200--Sobic004G345700 Sobic001G176200--Sobic006G173100 Sobic010G245000 Sobic010G245000 Sobic001G176200--Sobic010G245000 Sobic002G320500 Sobic002G320500 Sobic001G176200--Sobic002G320500 Sobic008G153000 Sobic008G153000 Sobic006G046700--Sobic008G153000 Sobic004G031700 Sobic004G031700 Sobic006G046700--Sobic004G031700 Sobic007G026000 Sobic007G026000 Sobic006G046700--Sobic007G026000 Sobic001G206100 Sobic001G206100 Sobic006G046700--Sobic001G206100 Sobic001G306900 Sobic001G306900 Sobic006G046700--Sobic001G306900 Sobic006G046700--Sobic003G445400 Sobic006G046700--Sobic001G425000 Sobic001G405300 Sobic001G405300 Sobic006G046700--Sobic001G405300 Sobic006G013500 Sobic006G013500 Sobic006G046700--Sobic006G013500 Sobic003G445400--Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic003G445400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic003G445400--Sobic008G067600 Sobic003G307000 Sobic003G307000 Sobic003G445400--Sobic003G307000 Sobic002G158700 Sobic002G158700 Sobic003G445400--Sobic002G158700 Sobic006G128900 Sobic006G128900 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic001G511500 Sobic001G511500 Sobic003G445400--Sobic001G511500 Sobic003G445400--Sobic008G153000 Sobic006G032400 Sobic006G032400 Sobic005G015900--Sobic006G032400 Sobic005G015900--Sobic004G031700 Sobic004G219100 Sobic004G219100 Sobic005G015900--Sobic004G219100 Sobic005G015900--Sobic001G176200 Sobic005G015900--Sobic002G320500 Sobic005G015900--Sobic001G090400 Sobic005G015900--Sobic002G158700 Sobic001G303675 Sobic001G303675 Sobic005G015900--Sobic001G303675 Sobic005G015900--Sobic003G445400 Sobic008G152900--Sobic005G015900 Sobic001G464200 Sobic001G464200 Sobic008G152900--Sobic001G464200 Sobic008G152900--Sobic001G425000 Sobic008G152900--Sobic001G176200 Sobic008G152900--Sobic004G219100 Sobic004G197900 Sobic004G197900 Sobic008G152900--Sobic004G197900 Sobic006G078600 Sobic006G078600 Sobic008G152900--Sobic006G078600 Sobic008G152900--Sobic004G031700 Sobic008G152900--Sobic003G445400 Sobic008G073000 Sobic008G073000 Sobic001G202266--Sobic008G073000 Sobic001G202266--Sobic001G425000 Sobic002G001600 Sobic002G001600 Sobic001G202266--Sobic002G001600 Sobic004G116600 Sobic004G116600 Sobic001G202266--Sobic004G116600 Sobic005G030300 Sobic005G030300 Sobic001G202266--Sobic005G030300 Sobic006G278200 Sobic006G278200 Sobic001G202266--Sobic006G278200 Sobic003G073000 Sobic003G073000 Sobic001G202266--Sobic003G073000 Sobic006G130200 Sobic006G130200 Sobic001G202266--Sobic006G130200 Sobic002G061400 Sobic002G061400 Sobic001G202266--Sobic002G061400 Sobic006G186400--Sobic008G153000 Sobic006G186400--Sobic001G176200 Sobic004G067700 Sobic004G067700 Sobic006G186400--Sobic004G067700 Sobic008G173100 Sobic008G173100 Sobic006G186400--Sobic008G173100 Sobic007G056500 Sobic007G056500 Sobic006G186400--Sobic007G056500 Sobic002G260400 Sobic002G260400 Sobic006G186400--Sobic002G260400 Sobic006G186400--Sobic006G046700 Sobic006G186400--Sobic003G073000 Sobic001G408700 Sobic001G408700 Sobic006G186400--Sobic001G408700 Sobic009G017200 Sobic009G017200 Sobic004G180900--Sobic009G017200 Sobic004G180900--Sobic007G056500 Sobic004G180900--Sobic001G425000 Sobic004G345400 Sobic004G345400 Sobic004G180900--Sobic004G345400 Sobic004G180900--Sobic006G186400 Sobic008G058800 Sobic008G058800 Sobic004G180900--Sobic008G058800 Sobic004G180900--Sobic007G026000 Sobic010G077500 Sobic010G077500 Sobic004G180900--Sobic010G077500 Sobic003G381600 Sobic003G381600 Sobic004G180900--Sobic003G381600
Octagon: transcription factors


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