Gene annotation
Transcriptome id Sobic.008G152900.2,Sobic.008G152900.1,Sobic.008G152900.3
Synonym
Functional annotation MATH domain containing protein, expressed
UniProt A0A1Z5R6W0 , A0A1Z5R6T2 , A0A1Z5R6W5
Pfam PF00917
Panther DB PTHR24007 PTHR26379 PTHR26379:SF164
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G43560 : TRAF-like superfamily protein
RAP-DB (Rice) LOC_Os12g40520.1 : MATH domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025247 , Zm00025a004566 , Zm00025a004564
Brachypodium KQJ85980
Barley HORVU5Hr1G016190.3 , HORVU5Hr1G016190.1 , HORVU5Hr1G016190.4 , HORVU5Hr1G016190.5
Wheat TraesCS5A02G060400 , TraesCS5A02G060400 , TraesCS5A02G060400 , TraesCS5D02G072000 , TraesCS5B02G071600 , TraesCS5B02G071600 , TraesCS5B02G071600 , TraesCS5D02G072000 , TraesCS5D02G072000 , TraesCS5D02G072000
Populus -


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cDNA sequences
Sobic.008G152900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G015900 dnaJ domain containing protein, expressed -
2 Sobic.001G464200 flap endonuclease, putative, expressed K10846: ERCC5, XPG, DNA excision repair protein ERCC-5
3 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
4 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
5 Sobic.004G219100 phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative, expressed K03859: PIGC, phosphatidylinositol N-acetylglucosaminyltransferase subunit C
6 Sobic.004G197900 - -
7 Sobic.006G078600 expressed protein K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
8 Sobic.004G031700 expressed protein -
9 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
10 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
11 Sobic.002G278000 endonuclease/exonuclease/phosphatase family protein, putative, expressed K10772: AP endonuclease 2
12 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
13 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
14 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
15 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
16 Sobic.001G477800 expressed protein -
17 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
18 Sobic.007G061700 vacuolar protein sorting-associated protein 18, putative, expressed -
19 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
20 Sobic.005G013200 BAH domain containing protein, expressed -


Gene co-expression network
sample Sobic008G152900 Sobic008G152900 Sobic005G015900 Sobic005G015900 Sobic008G152900--Sobic005G015900 Sobic001G464200 Sobic001G464200 Sobic008G152900--Sobic001G464200 Sobic001G425000 Sobic001G425000 Sobic008G152900--Sobic001G425000 Sobic001G176200 Sobic001G176200 Sobic008G152900--Sobic001G176200 Sobic004G219100 Sobic004G219100 Sobic008G152900--Sobic004G219100 Sobic004G197900 Sobic004G197900 Sobic008G152900--Sobic004G197900 Sobic006G078600 Sobic006G078600 Sobic008G152900--Sobic006G078600 Sobic004G031700 Sobic004G031700 Sobic008G152900--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic008G152900--Sobic003G445400 Sobic006G032400 Sobic006G032400 Sobic005G015900--Sobic006G032400 Sobic005G015900--Sobic004G031700 Sobic005G015900--Sobic004G219100 Sobic005G015900--Sobic001G176200 Sobic002G320500 Sobic002G320500 Sobic005G015900--Sobic002G320500 Sobic001G090400 Sobic001G090400 Sobic005G015900--Sobic001G090400 Sobic002G158700 Sobic002G158700 Sobic005G015900--Sobic002G158700 Sobic001G303675 Sobic001G303675 Sobic005G015900--Sobic001G303675 Sobic005G015900--Sobic003G445400 Sobic001G464200--Sobic002G158700 Sobic001G544200 Sobic001G544200 Sobic001G464200--Sobic001G544200 Sobic001G464200--Sobic004G031700 Sobic001G477800 Sobic001G477800 Sobic001G464200--Sobic001G477800 Sobic006G128900 Sobic006G128900 Sobic001G464200--Sobic006G128900 Sobic002G144966 Sobic002G144966 Sobic001G464200--Sobic002G144966 Sobic001G511500 Sobic001G511500 Sobic001G464200--Sobic001G511500 Sobic010G263800 Sobic010G263800 Sobic001G464200--Sobic010G263800 Sobic001G464200--Sobic003G445400 Sobic002G197100 Sobic002G197100 Sobic001G425000--Sobic002G197100 Sobic001G425000--Sobic001G176200 Sobic006G046700 Sobic006G046700 Sobic001G425000--Sobic006G046700 Sobic001G425000--Sobic003G445400 Sobic001G425000--Sobic005G015900 Sobic001G425000--Sobic008G152900 Sobic001G202266 Sobic001G202266 Sobic001G425000--Sobic001G202266 Sobic006G186400 Sobic006G186400 Sobic001G425000--Sobic006G186400 Sobic004G180900 Sobic004G180900 Sobic001G425000--Sobic004G180900 Sobic001G176200--Sobic001G090400 Sobic002G370900 Sobic002G370900 Sobic001G176200--Sobic002G370900 Sobic001G176200--Sobic002G197100 Sobic005G154500 Sobic005G154500 Sobic001G176200--Sobic005G154500 Sobic001G176200--Sobic005G015900 Sobic004G345700 Sobic004G345700 Sobic001G176200--Sobic004G345700 Sobic006G173100 Sobic006G173100 Sobic001G176200--Sobic006G173100 Sobic010G245000 Sobic010G245000 Sobic001G176200--Sobic010G245000 Sobic001G176200--Sobic002G320500 Sobic004G219100--Sobic005G015900 Sobic001G407200 Sobic001G407200 Sobic004G219100--Sobic001G407200 Sobic005G013200 Sobic005G013200 Sobic004G219100--Sobic005G013200 Sobic004G219100--Sobic002G320500 Sobic004G219100--Sobic002G158700 Sobic010G129200 Sobic010G129200 Sobic004G219100--Sobic010G129200 Sobic004G219100--Sobic006G032400 Sobic008G149800 Sobic008G149800 Sobic004G219100--Sobic008G149800 Sobic004G219100--Sobic001G303675 Sobic008G117200 Sobic008G117200 Sobic004G197900--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic004G197900--Sobic002G421700 Sobic004G197900--Sobic008G152900 Sobic006G128800 Sobic006G128800 Sobic004G197900--Sobic006G128800 Sobic004G197900--Sobic001G425000 Sobic002G051450 Sobic002G051450 Sobic004G197900--Sobic002G051450 Sobic005G015100 Sobic005G015100 Sobic004G197900--Sobic005G015100 Sobic008G034600 Sobic008G034600 Sobic004G197900--Sobic008G034600 Sobic004G197900--Sobic010G263800 Sobic006G078600--Sobic008G152900 Sobic004G018300 Sobic004G018300 Sobic006G078600--Sobic004G018300 Sobic002G336800 Sobic002G336800 Sobic006G078600--Sobic002G336800 Sobic006G078600--Sobic004G219100 Sobic006G078600--Sobic002G158700 Sobic006G078600--Sobic005G013200 Sobic002G278000 Sobic002G278000 Sobic006G078600--Sobic002G278000 Sobic006G078600--Sobic008G149800 Sobic010G166000 Sobic010G166000 Sobic006G078600--Sobic010G166000 Sobic009G000500 Sobic009G000500 Sobic004G031700--Sobic009G000500 Sobic004G031700--Sobic003G445400 Sobic004G031700--Sobic001G544200 Sobic004G031700--Sobic001G477800 Sobic006G080300 Sobic006G080300 Sobic004G031700--Sobic006G080300 Sobic004G031700--Sobic006G128900 Sobic001G094000 Sobic001G094000 Sobic004G031700--Sobic001G094000 Sobic004G031700--Sobic001G511500 Sobic004G031700--Sobic002G158700 Sobic003G445400--Sobic004G031700 Sobic003G445400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic003G445400--Sobic008G067600 Sobic003G307000 Sobic003G307000 Sobic003G445400--Sobic003G307000 Sobic003G445400--Sobic002G158700 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic003G445400--Sobic001G511500 Sobic008G153000 Sobic008G153000 Sobic003G445400--Sobic008G153000
Octagon: transcription factors


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