Gene annotation
Transcriptome id Sobic.006G078600.3,Sobic.006G078600.2,Sobic.006G078600.1
Synonym Sb06g016550
Functional annotation expressed protein
UniProt A0A1B6PKV0 , A0A1Z5RDQ2 , A0A1Z5RDX4
Pfam PF00856
Panther DB PTHR12197 PTHR12197:SF178
NCBI CDD -
KEGG Orthology K11426; [histone H3]-lysine4/36 N-trimethyltransferase SMYD
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G43245 : SET domain-containing protein
RAP-DB (Rice) LOC_Os04g34610.1 : expressed protein
MaizeGDB (Corn) Zm00025a011433
Brachypodium -
Barley -
Wheat TraesCS2D02G299900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G152900 MATH domain containing protein, expressed -
2 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
3 Sobic.002G336800 PPR repeat domain containing protein, putative, expressed -
4 Sobic.004G219100 phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative, expressed K03859: PIGC, phosphatidylinositol N-acetylglucosaminyltransferase subunit C
5 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
6 Sobic.005G013200 BAH domain containing protein, expressed -
7 Sobic.002G278000 endonuclease/exonuclease/phosphatase family protein, putative, expressed K10772: AP endonuclease 2
8 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
9 Sobic.010G166000 ESP1, putative, expressed -
10 Sobic.001G464200 flap endonuclease, putative, expressed K10846: ERCC5, XPG, DNA excision repair protein ERCC-5
11 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
12 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
13 Sobic.007G061700 vacuolar protein sorting-associated protein 18, putative, expressed -
14 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
15 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
16 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
17 Sobic.008G081600 expressed protein -
18 Sobic.006G076300 RING-H2 finger protein, putative, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
19 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
20 Sobic.006G215900 OsFBX172 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic006G078600 Sobic006G078600 Sobic008G152900 Sobic008G152900 Sobic006G078600--Sobic008G152900 Sobic004G018300 Sobic004G018300 Sobic006G078600--Sobic004G018300 Sobic002G336800 Sobic002G336800 Sobic006G078600--Sobic002G336800 Sobic004G219100 Sobic004G219100 Sobic006G078600--Sobic004G219100 Sobic002G158700 Sobic002G158700 Sobic006G078600--Sobic002G158700 Sobic005G013200 Sobic005G013200 Sobic006G078600--Sobic005G013200 Sobic002G278000 Sobic002G278000 Sobic006G078600--Sobic002G278000 Sobic008G149800 Sobic008G149800 Sobic006G078600--Sobic008G149800 Sobic010G166000 Sobic010G166000 Sobic006G078600--Sobic010G166000 Sobic005G015900 Sobic005G015900 Sobic008G152900--Sobic005G015900 Sobic001G464200 Sobic001G464200 Sobic008G152900--Sobic001G464200 Sobic001G425000 Sobic001G425000 Sobic008G152900--Sobic001G425000 Sobic001G176200 Sobic001G176200 Sobic008G152900--Sobic001G176200 Sobic008G152900--Sobic004G219100 Sobic004G197900 Sobic004G197900 Sobic008G152900--Sobic004G197900 Sobic008G152900--Sobic006G078600 Sobic004G031700 Sobic004G031700 Sobic008G152900--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic008G152900--Sobic003G445400 Sobic004G087600 Sobic004G087600 Sobic004G018300--Sobic004G087600 Sobic001G167200 Sobic001G167200 Sobic004G018300--Sobic001G167200 Sobic008G011100 Sobic008G011100 Sobic004G018300--Sobic008G011100 Sobic004G018300--Sobic002G158700 Sobic002G396000 Sobic002G396000 Sobic004G018300--Sobic002G396000 Sobic001G081000 Sobic001G081000 Sobic004G018300--Sobic001G081000 Sobic008G083000 Sobic008G083000 Sobic004G018300--Sobic008G083000 Sobic009G126400 Sobic009G126400 Sobic004G018300--Sobic009G126400 Sobic004G223600 Sobic004G223600 Sobic004G018300--Sobic004G223600 Sobic005G079025 Sobic005G079025 Sobic002G336800--Sobic005G079025 Sobic002G336800--Sobic008G011100 Sobic002G336800--Sobic004G087600 Sobic003G144950 Sobic003G144950 Sobic002G336800--Sobic003G144950 Sobic002G336800--Sobic006G078600 Sobic009G005100 Sobic009G005100 Sobic002G336800--Sobic009G005100 Sobic009G007800 Sobic009G007800 Sobic002G336800--Sobic009G007800 Sobic001G360900 Sobic001G360900 Sobic002G336800--Sobic001G360900 Sobic009G103600 Sobic009G103600 Sobic002G336800--Sobic009G103600 Sobic004G219100--Sobic005G015900 Sobic001G407200 Sobic001G407200 Sobic004G219100--Sobic001G407200 Sobic004G219100--Sobic005G013200 Sobic002G320500 Sobic002G320500 Sobic004G219100--Sobic002G320500 Sobic004G219100--Sobic002G158700 Sobic010G129200 Sobic010G129200 Sobic004G219100--Sobic010G129200 Sobic006G032400 Sobic006G032400 Sobic004G219100--Sobic006G032400 Sobic004G219100--Sobic008G149800 Sobic001G303675 Sobic001G303675 Sobic004G219100--Sobic001G303675 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic002G158700--Sobic001G464200 Sobic002G158700--Sobic001G167200 Sobic002G158700--Sobic004G031700 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic002G158700--Sobic008G149800 Sobic002G158700--Sobic002G396000 Sobic002G103600 Sobic002G103600 Sobic005G013200--Sobic002G103600 Sobic005G013200--Sobic010G129200 Sobic008G162900 Sobic008G162900 Sobic005G013200--Sobic008G162900 Sobic005G013200--Sobic001G407200 Sobic001G222500 Sobic001G222500 Sobic005G013200--Sobic001G222500 Sobic002G408200 Sobic002G408200 Sobic005G013200--Sobic002G408200 Sobic008G028700 Sobic008G028700 Sobic005G013200--Sobic008G028700 Sobic001G251700 Sobic001G251700 Sobic005G013200--Sobic001G251700 Sobic004G084300 Sobic004G084300 Sobic005G013200--Sobic004G084300 Sobic002G063900 Sobic002G063900 Sobic002G278000--Sobic002G063900 Sobic006G116100 Sobic006G116100 Sobic002G278000--Sobic006G116100 Sobic002G278000--Sobic005G013200 Sobic001G511500 Sobic001G511500 Sobic002G278000--Sobic001G511500 Sobic002G278000--Sobic008G149800 Sobic002G278000--Sobic005G015900 Sobic002G278000--Sobic008G028700 Sobic008G173100 Sobic008G173100 Sobic002G278000--Sobic008G173100 Sobic002G278000--Sobic001G167200 Sobic008G149800--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic008G149800--Sobic008G153000 Sobic008G149800--Sobic007G061700 Sobic002G357700 Sobic002G357700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic004G246100 Sobic004G246100 Sobic008G149800--Sobic004G246100 Sobic008G149800--Sobic002G158700 Sobic005G154500 Sobic005G154500 Sobic008G149800--Sobic005G154500 Sobic001G155000 Sobic001G155000 Sobic008G149800--Sobic001G155000 Sobic010G166000--Sobic002G158700 Sobic010G166000--Sobic008G149800 Sobic001G296500 Sobic001G296500 Sobic010G166000--Sobic001G296500 Sobic010G166000--Sobic003G401000 Sobic010G166000--Sobic008G011100 Sobic010G166000--Sobic004G219100 Sobic009G100050 Sobic009G100050 Sobic010G166000--Sobic009G100050 Sobic006G165000 Sobic006G165000 Sobic010G166000--Sobic006G165000 Sobic005G015100 Sobic005G015100 Sobic010G166000--Sobic005G015100
Octagon: transcription factors


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