Gene annotation
Transcriptome id Sobic.002G278000.6,Sobic.002G278000.3,Sobic.002G278000.1,Sobic.002G278000.4,Sobic.002G278000.5,Sobic.002G278000.10,Sobic.002G278000.8,Sobic.002G278000.2,Sobic.002G278000.7,Sobic.002G278000.9
Synonym Sb02g031100
Functional annotation endonuclease/exonuclease/phosphatase family protein, putative, expressed
UniProt A0A1B6QDU1 , A0A1W0W5Z4 , A0A1W0W656 , A0A1B6QDU6 , C5X6U3
Pfam PF06839 PF03372 PF03372 PF06839
Panther DB PTHR22748 PTHR22748:SF4
NCBI CDD KOG1294; Apurinic/apyrimidinic endonuclease and related enzymes
KEGG Orthology K10772; AP endonuclease 2
Gene Ontology GO:0008270; zinc ion binding GO:0006281DNA repair GO:0004518nuclease activity


Orthologs (automatic annotation)
TAIR AT4G36050 : endonuclease/exonuclease/phosphatase family protein
RAP-DB (Rice) LOC_Os09g36530.2,LOC_Os09g36530.1 : endonuclease/exonuclease/phosphatase family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ91226
Barley HORVU5Hr1G083000.3 , HORVU5Hr1G083000.1 , HORVU5Hr1G083000.6 , HORVU5Hr1G083000.4 , HORVU5Hr1G083000.9 , HORVU5Hr1G083000.10 , HORVU5Hr1G083000.12 , HORVU5Hr1G083000.13 , HORVU5Hr1G083000.14 , HORVU5Hr1G083000.15 , HORVU5Hr1G083000.16 , HORVU5Hr1G083000.18 , HORVU5Hr1G083000.19 , HORVU5Hr1G083000.26 , HORVU5Hr1G083000.21 , HORVU5Hr1G083000.23 , HORVU5Hr1G083000.22
Wheat TraesCS5B02G327700 , TraesCS5B02G327700 , TraesCS5A02G327800 , TraesCS5A02G327800 , TraesCS5D02G333700 , TraesCS5D02G333700
Populus -


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cDNA sequences
Sobic.002G278000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G063900 zinc ion binding protein, putative, expressed -
2 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
3 Sobic.005G013200 BAH domain containing protein, expressed -
4 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
5 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
6 Sobic.005G015900 dnaJ domain containing protein, expressed -
7 Sobic.008G028700 SET domain containing protein, expressed -
8 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
9 Sobic.001G167200 DNA-directed polymerase, putative, expressed K03511: DNA polymerase kappa
10 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
11 Sobic.002G357700 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
12 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
13 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
14 Sobic.006G032400 expressed protein -
15 Sobic.009G086900 expressed protein -
16 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
17 Sobic.007G090430 - -
18 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
19 Sobic.004G219100 phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative, expressed K03859: PIGC, phosphatidylinositol N-acetylglucosaminyltransferase subunit C
20 Sobic.001G303675 - -


Gene co-expression network
sample Sobic002G278000 Sobic002G278000 Sobic002G063900 Sobic002G063900 Sobic002G278000--Sobic002G063900 Sobic006G116100 Sobic006G116100 Sobic002G278000--Sobic006G116100 Sobic005G013200 Sobic005G013200 Sobic002G278000--Sobic005G013200 Sobic001G511500 Sobic001G511500 Sobic002G278000--Sobic001G511500 Sobic008G149800 Sobic008G149800 Sobic002G278000--Sobic008G149800 Sobic005G015900 Sobic005G015900 Sobic002G278000--Sobic005G015900 Sobic008G028700 Sobic008G028700 Sobic002G278000--Sobic008G028700 Sobic008G173100 Sobic008G173100 Sobic002G278000--Sobic008G173100 Sobic001G167200 Sobic001G167200 Sobic002G278000--Sobic001G167200 Sobic002G063900--Sobic008G173100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G260400 Sobic002G260400 Sobic002G063900--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic002G063900--Sobic007G090430 Sobic004G246100 Sobic004G246100 Sobic002G063900--Sobic004G246100 Sobic002G063900--Sobic002G278000 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600 Sobic008G153000 Sobic008G153000 Sobic006G116100--Sobic008G153000 Sobic006G116100--Sobic008G149800 Sobic006G116100--Sobic008G173100 Sobic003G160000 Sobic003G160000 Sobic006G116100--Sobic003G160000 Sobic006G116100--Sobic002G063900 Sobic002G357700 Sobic002G357700 Sobic006G116100--Sobic002G357700 Sobic003G241200 Sobic003G241200 Sobic006G116100--Sobic003G241200 Sobic009G119000 Sobic009G119000 Sobic006G116100--Sobic009G119000 Sobic003G416700 Sobic003G416700 Sobic006G116100--Sobic003G416700 Sobic002G103600 Sobic002G103600 Sobic005G013200--Sobic002G103600 Sobic010G129200 Sobic010G129200 Sobic005G013200--Sobic010G129200 Sobic008G162900 Sobic008G162900 Sobic005G013200--Sobic008G162900 Sobic001G407200 Sobic001G407200 Sobic005G013200--Sobic001G407200 Sobic001G222500 Sobic001G222500 Sobic005G013200--Sobic001G222500 Sobic002G408200 Sobic002G408200 Sobic005G013200--Sobic002G408200 Sobic005G013200--Sobic008G028700 Sobic001G251700 Sobic001G251700 Sobic005G013200--Sobic001G251700 Sobic004G084300 Sobic004G084300 Sobic005G013200--Sobic004G084300 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic006G209850 Sobic006G209850 Sobic001G511500--Sobic006G209850 Sobic006G128900 Sobic006G128900 Sobic001G511500--Sobic006G128900 Sobic003G119000 Sobic003G119000 Sobic001G511500--Sobic003G119000 Sobic004G031700 Sobic004G031700 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic008G149800--Sobic006G116100 Sobic008G149800--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic008G149800--Sobic007G061700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic008G149800--Sobic004G246100 Sobic002G158700 Sobic002G158700 Sobic008G149800--Sobic002G158700 Sobic005G154500 Sobic005G154500 Sobic008G149800--Sobic005G154500 Sobic001G155000 Sobic001G155000 Sobic008G149800--Sobic001G155000 Sobic005G015900--Sobic006G032400 Sobic005G015900--Sobic004G031700 Sobic004G219100 Sobic004G219100 Sobic005G015900--Sobic004G219100 Sobic001G176200 Sobic001G176200 Sobic005G015900--Sobic001G176200 Sobic002G320500 Sobic002G320500 Sobic005G015900--Sobic002G320500 Sobic001G090400 Sobic001G090400 Sobic005G015900--Sobic001G090400 Sobic005G015900--Sobic002G158700 Sobic001G303675 Sobic001G303675 Sobic005G015900--Sobic001G303675 Sobic005G015900--Sobic003G445400 Sobic010G279450 Sobic010G279450 Sobic008G028700--Sobic010G279450 Sobic009G040600 Sobic009G040600 Sobic008G028700--Sobic009G040600 Sobic004G009600 Sobic004G009600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic007G065400 Sobic007G065400 Sobic008G028700--Sobic007G065400 Sobic010G139000 Sobic010G139000 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G113100 Sobic008G113100 Sobic008G028700--Sobic008G113100 Sobic008G173100--Sobic002G260400 Sobic008G173100--Sobic007G090430 Sobic008G173100--Sobic006G116100 Sobic008G173100--Sobic002G063900 Sobic002G264200 Sobic002G264200 Sobic008G173100--Sobic002G264200 Sobic010G236400 Sobic010G236400 Sobic008G173100--Sobic010G236400 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic010G245000 Sobic010G245000 Sobic008G173100--Sobic010G245000 Sobic001G167200--Sobic002G158700 Sobic009G210500 Sobic009G210500 Sobic001G167200--Sobic009G210500 Sobic004G018300 Sobic004G018300 Sobic001G167200--Sobic004G018300 Sobic001G167200--Sobic005G015900 Sobic008G011100 Sobic008G011100 Sobic001G167200--Sobic008G011100 Sobic001G167200--Sobic001G090400 Sobic001G219600 Sobic001G219600 Sobic001G167200--Sobic001G219600 Sobic010G136600 Sobic010G136600 Sobic001G167200--Sobic010G136600 Sobic010G065300 Sobic010G065300 Sobic001G167200--Sobic010G065300
Octagon: transcription factors


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