Gene annotation
Transcriptome id Sobic.001G464200.1,Sobic.001G464200.4,Sobic.001G464200.2,Sobic.001G464200.3
Synonym UVH3, Sb01g043560, UVR1
Functional annotation flap endonuclease, putative, expressed
UniProt A0A1B6QPS5 , A0A1B6QPS8 , A0A1B6QPT0 , C6JST6 , C5WTS0
Pfam PF00867 PF00752 PF00867
Panther DB PTHR11081 PTHR11081:SF1
NCBI CDD -
KEGG Orthology K10846; ERCC5, XPG, DNA excision repair protein ERCC-5
Gene Ontology GO:0004518; nuclease activity GO:0006281DNA repair GO:0006289nucleotide-excision repair GO:0005634nucleus GO:0004519endonuclease activity GO:0003697single-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT3G28030 : 5\'-3\' exonuclease family protein
RAP-DB (Rice) LOC_Os03g10780.1 : flap endonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a001128
Brachypodium KQK23033 , PNT77953 , PNT77954 , PNT77955 , KQK23032 , KQK23034
Barley HORVU4Hr1G069790.24 , HORVU4Hr1G069790.22 , HORVU4Hr1G069790.23 , HORVU4Hr1G069790.20 , HORVU4Hr1G069790.21 , HORVU4Hr1G069790.7 , HORVU4Hr1G069790.17 , HORVU4Hr1G069790.16 , HORVU4Hr1G069790.15 , HORVU4Hr1G069790.14 , HORVU4Hr1G069790.13 , HORVU4Hr1G069790.12 , HORVU4Hr1G069790.11 , HORVU4Hr1G069790.10 , HORVU4Hr1G069790.19 , HORVU4Hr1G069790.18 , HORVU4Hr1G069790.9 , HORVU4Hr1G069790.8 , HORVU4Hr1G069790.6 , HORVU4Hr1G069790.5 , HORVU4Hr1G069790.4 , HORVU4Hr1G069790.3 , HORVU4Hr1G069790.2 , HORVU4Hr1G069790.1
Wheat TraesCS4B02G257000 , TraesCS4A02G048000 , TraesCS4D02G256900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
2 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
3 Sobic.004G031700 expressed protein -
4 Sobic.001G477800 expressed protein -
5 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
6 Sobic.002G144966 - K02997: RP-S9e, small subunit ribosomal protein S9e
7 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
8 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
9 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
10 Sobic.006G009400 G-patch domain containing protein, expressed -
11 Sobic.006G209850 - -
12 Sobic.005G045300 PX domain containing protein, putative, expressed K17925: sorting nexin-13
13 Sobic.001G094000 expressed protein -
14 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
15 Sobic.005G015100 OsFBX291 - F-box domain containing protein, expressed -
16 Sobic.008G024600 expressed protein -
17 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
18 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
19 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
20 Sobic.005G015900 dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic001G464200 Sobic001G464200 Sobic002G158700 Sobic002G158700 Sobic001G464200--Sobic002G158700 Sobic001G544200 Sobic001G544200 Sobic001G464200--Sobic001G544200 Sobic004G031700 Sobic004G031700 Sobic001G464200--Sobic004G031700 Sobic001G477800 Sobic001G477800 Sobic001G464200--Sobic001G477800 Sobic006G128900 Sobic006G128900 Sobic001G464200--Sobic006G128900 Sobic002G144966 Sobic002G144966 Sobic001G464200--Sobic002G144966 Sobic001G511500 Sobic001G511500 Sobic001G464200--Sobic001G511500 Sobic010G263800 Sobic010G263800 Sobic001G464200--Sobic010G263800 Sobic003G445400 Sobic003G445400 Sobic001G464200--Sobic003G445400 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic002G158700--Sobic001G464200 Sobic001G167200 Sobic001G167200 Sobic002G158700--Sobic001G167200 Sobic002G158700--Sobic004G031700 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G396000 Sobic002G396000 Sobic002G158700--Sobic002G396000 Sobic001G544200--Sobic004G031700 Sobic001G544200--Sobic001G477800 Sobic001G544200--Sobic001G464200 Sobic009G040700 Sobic009G040700 Sobic001G544200--Sobic009G040700 Sobic001G544200--Sobic001G511500 Sobic001G544200--Sobic006G128900 Sobic008G078100 Sobic008G078100 Sobic001G544200--Sobic008G078100 Sobic008G054500 Sobic008G054500 Sobic001G544200--Sobic008G054500 Sobic001G094000 Sobic001G094000 Sobic001G544200--Sobic001G094000 Sobic009G000500 Sobic009G000500 Sobic004G031700--Sobic009G000500 Sobic004G031700--Sobic003G445400 Sobic004G031700--Sobic001G544200 Sobic004G031700--Sobic001G477800 Sobic006G080300 Sobic006G080300 Sobic004G031700--Sobic006G080300 Sobic004G031700--Sobic006G128900 Sobic004G031700--Sobic001G094000 Sobic004G031700--Sobic001G511500 Sobic004G031700--Sobic002G158700 Sobic002G313300 Sobic002G313300 Sobic001G477800--Sobic002G313300 Sobic001G477800--Sobic004G031700 Sobic001G477800--Sobic001G094000 Sobic001G477800--Sobic001G544200 Sobic001G543900 Sobic001G543900 Sobic001G477800--Sobic001G543900 Sobic001G477800--Sobic006G080300 Sobic001G477800--Sobic009G040700 Sobic007G011400 Sobic007G011400 Sobic001G477800--Sobic007G011400 Sobic006G009400 Sobic006G009400 Sobic001G477800--Sobic006G009400 Sobic006G209850 Sobic006G209850 Sobic006G128900--Sobic006G209850 Sobic006G128900--Sobic001G511500 Sobic006G128900--Sobic004G031700 Sobic006G128900--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic006G128900--Sobic001G090400 Sobic006G128900--Sobic003G445400 Sobic003G268300 Sobic003G268300 Sobic006G128900--Sobic003G268300 Sobic006G128900--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic006G128900--Sobic002G157000 Sobic002G144966--Sobic001G464200 Sobic006G262200 Sobic006G262200 Sobic002G144966--Sobic006G262200 Sobic005G077466 Sobic005G077466 Sobic002G144966--Sobic005G077466 Sobic001G111900 Sobic001G111900 Sobic002G144966--Sobic001G111900 Sobic003G087400 Sobic003G087400 Sobic002G144966--Sobic003G087400 Sobic009G065100 Sobic009G065100 Sobic002G144966--Sobic009G065100 Sobic006G076300 Sobic006G076300 Sobic002G144966--Sobic006G076300 Sobic004G039700 Sobic004G039700 Sobic002G144966--Sobic004G039700 Sobic002G144966--Sobic001G511500 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic001G511500--Sobic006G209850 Sobic001G511500--Sobic006G128900 Sobic003G119000 Sobic003G119000 Sobic001G511500--Sobic003G119000 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic010G263800--Sobic002G077200 Sobic010G263800--Sobic002G313300 Sobic002G157300 Sobic002G157300 Sobic010G263800--Sobic002G157300 Sobic007G205800 Sobic007G205800 Sobic010G263800--Sobic007G205800 Sobic009G117400 Sobic009G117400 Sobic010G263800--Sobic009G117400 Sobic001G347600 Sobic001G347600 Sobic010G263800--Sobic001G347600 Sobic008G034600 Sobic008G034600 Sobic010G263800--Sobic008G034600 Sobic003G445400--Sobic004G031700 Sobic003G445400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic003G445400--Sobic008G067600 Sobic003G445400--Sobic003G307000 Sobic003G445400--Sobic002G158700 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic003G445400--Sobic001G511500 Sobic008G153000 Sobic008G153000 Sobic003G445400--Sobic008G153000
Octagon: transcription factors


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