Gene annotation
Transcriptome id Sobic.003G073000.1
Synonym Sb03g006180, ATIWS1, IWS1
Functional annotation IWS1 C-terminus family protein, putative, expressed
UniProt C5XQ13
Pfam PF08711
Panther DB PTHR22908
NCBI CDD KOG1793; Uncharacterized conserved protein
KEGG Orthology K17498; SPN1, transcription factor SPN1
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G32130 : Transcription elongation factor (TFIIS) family protein
RAP-DB (Rice) LOC_Os01g05420.1 : IWS1 C-terminus family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023476 , Zm00025a035617
Brachypodium KQK02693
Barley HORVU3Hr1G012950.4 , HORVU3Hr1G012950.5 , HORVU3Hr1G012950.1 , HORVU3Hr1G012950.2
Wheat TraesCS3B02G085200 , TraesCS3D02G070600
Populus -


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cDNA sequences
Sobic.003G073000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G206100 expressed protein -
2 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
3 Sobic.004G041500 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
4 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
5 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
6 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
7 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
8 Sobic.001G517500 Ubiquitin family domain containing protein, expressed K04523: UBQLN, ubiquilin
9 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
10 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
11 Sobic.001G287800 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
12 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
13 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
14 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
16 Sobic.008G101800 expressed protein -
17 Sobic.001G257300 OsFBL52 - F-box domain and LRR containing protein, expressed -
18 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
19 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
20 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B


Gene co-expression network
sample Sobic003G073000 Sobic003G073000 Sobic001G206100 Sobic001G206100 Sobic003G073000--Sobic001G206100 Sobic004G257400 Sobic004G257400 Sobic003G073000--Sobic004G257400 Sobic004G041500 Sobic004G041500 Sobic003G073000--Sobic004G041500 Sobic007G185900 Sobic007G185900 Sobic003G073000--Sobic007G185900 Sobic006G186400 Sobic006G186400 Sobic003G073000--Sobic006G186400 Sobic004G349900 Sobic004G349900 Sobic003G073000--Sobic004G349900 Sobic001G408700 Sobic001G408700 Sobic003G073000--Sobic001G408700 Sobic001G517500 Sobic001G517500 Sobic003G073000--Sobic001G517500 Sobic001G251700 Sobic001G251700 Sobic003G073000--Sobic001G251700 Sobic001G257300 Sobic001G257300 Sobic001G206100--Sobic001G257300 Sobic006G013500 Sobic006G013500 Sobic001G206100--Sobic006G013500 Sobic002G320500 Sobic002G320500 Sobic001G206100--Sobic002G320500 Sobic006G080300 Sobic006G080300 Sobic001G206100--Sobic006G080300 Sobic002G157000 Sobic002G157000 Sobic001G206100--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic001G206100--Sobic009G000500 Sobic004G213000 Sobic004G213000 Sobic001G206100--Sobic004G213000 Sobic001G356500 Sobic001G356500 Sobic001G206100--Sobic001G356500 Sobic002G161000 Sobic002G161000 Sobic001G206100--Sobic002G161000 Sobic002G248400 Sobic002G248400 Sobic004G257400--Sobic002G248400 Sobic003G108700 Sobic003G108700 Sobic004G257400--Sobic003G108700 Sobic008G054500 Sobic008G054500 Sobic004G257400--Sobic008G054500 Sobic003G445400 Sobic003G445400 Sobic004G257400--Sobic003G445400 Sobic007G026300 Sobic007G026300 Sobic004G257400--Sobic007G026300 Sobic004G257400--Sobic003G073000 Sobic001G090400 Sobic001G090400 Sobic004G257400--Sobic001G090400 Sobic007G167500 Sobic007G167500 Sobic004G257400--Sobic007G167500 Sobic004G257400--Sobic001G251700 Sobic004G041500--Sobic003G073000 Sobic001G287800 Sobic001G287800 Sobic004G041500--Sobic001G287800 Sobic004G041500--Sobic001G251700 Sobic004G041500--Sobic004G349900 Sobic004G041500--Sobic001G356500 Sobic010G240900 Sobic010G240900 Sobic004G041500--Sobic010G240900 Sobic003G220200 Sobic003G220200 Sobic004G041500--Sobic003G220200 Sobic007G056500 Sobic007G056500 Sobic004G041500--Sobic007G056500 Sobic004G041500--Sobic004G257400 Sobic004G196700 Sobic004G196700 Sobic007G185900--Sobic004G196700 Sobic002G157300 Sobic002G157300 Sobic007G185900--Sobic002G157300 Sobic007G078000 Sobic007G078000 Sobic007G185900--Sobic007G078000 Sobic010G260500 Sobic010G260500 Sobic007G185900--Sobic010G260500 Sobic002G313300 Sobic002G313300 Sobic007G185900--Sobic002G313300 Sobic007G185900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G185900--Sobic003G397800 Sobic005G149500 Sobic005G149500 Sobic007G185900--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic007G185900--Sobic003G187400 Sobic008G153000 Sobic008G153000 Sobic006G186400--Sobic008G153000 Sobic001G176200 Sobic001G176200 Sobic006G186400--Sobic001G176200 Sobic004G067700 Sobic004G067700 Sobic006G186400--Sobic004G067700 Sobic008G173100 Sobic008G173100 Sobic006G186400--Sobic008G173100 Sobic006G186400--Sobic007G056500 Sobic002G260400 Sobic002G260400 Sobic006G186400--Sobic002G260400 Sobic006G046700 Sobic006G046700 Sobic006G186400--Sobic006G046700 Sobic006G186400--Sobic003G073000 Sobic006G186400--Sobic001G408700 Sobic007G137900 Sobic007G137900 Sobic004G349900--Sobic007G137900 Sobic004G349900--Sobic002G157300 Sobic006G128800 Sobic006G128800 Sobic004G349900--Sobic006G128800 Sobic004G349900--Sobic001G206100 Sobic004G349900--Sobic003G220200 Sobic007G011400 Sobic007G011400 Sobic004G349900--Sobic007G011400 Sobic003G261300 Sobic003G261300 Sobic004G349900--Sobic003G261300 Sobic008G116500 Sobic008G116500 Sobic004G349900--Sobic008G116500 Sobic004G349900--Sobic007G185900 Sobic003G205501 Sobic003G205501 Sobic001G408700--Sobic003G205501 Sobic004G007300 Sobic004G007300 Sobic001G408700--Sobic004G007300 Sobic004G345700 Sobic004G345700 Sobic001G408700--Sobic004G345700 Sobic001G056200 Sobic001G056200 Sobic001G408700--Sobic001G056200 Sobic007G118200 Sobic007G118200 Sobic001G408700--Sobic007G118200 Sobic006G267300 Sobic006G267300 Sobic001G408700--Sobic006G267300 Sobic002G197100 Sobic002G197100 Sobic001G408700--Sobic002G197100 Sobic004G283000 Sobic004G283000 Sobic001G408700--Sobic004G283000 Sobic010G245000 Sobic010G245000 Sobic001G408700--Sobic010G245000 Sobic003G355000 Sobic003G355000 Sobic001G517500--Sobic003G355000 Sobic007G119200 Sobic007G119200 Sobic001G517500--Sobic007G119200 Sobic007G046200 Sobic007G046200 Sobic001G517500--Sobic007G046200 Sobic001G517500--Sobic003G397800 Sobic001G517500--Sobic003G073000 Sobic002G034600 Sobic002G034600 Sobic001G517500--Sobic002G034600 Sobic002G353600 Sobic002G353600 Sobic001G517500--Sobic002G353600 Sobic004G146500 Sobic004G146500 Sobic001G517500--Sobic004G146500 Sobic001G517500--Sobic001G408700 Sobic001G251700--Sobic007G137900 Sobic003G200200 Sobic003G200200 Sobic001G251700--Sobic003G200200 Sobic001G251700--Sobic002G157300 Sobic001G251700--Sobic002G157000 Sobic006G082600 Sobic006G082600 Sobic001G251700--Sobic006G082600 Sobic001G251700--Sobic002G248400 Sobic001G251700--Sobic002G320500 Sobic003G268300 Sobic003G268300 Sobic001G251700--Sobic003G268300 Sobic001G251700--Sobic003G220200
Octagon: transcription factors


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