Gene annotation
Transcriptome id Sobic.004G041500.1
Synonym Sb04g003600, WIN2
Functional annotation protein phosphatase 2C, putative, expressed
UniProt C5XUP3
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF352
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K17506; PPM1L, protein phosphatase 1L
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT4G31750 : HOPW1-1-interacting 2
RAP-DB (Rice) LOC_Os02g05630.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a018999 , Zm00025a034885
Brachypodium KQK17349 , KQK17350
Barley HORVU6Hr1G021750.1 , HORVU6Hr1G021750.3 , HORVU6Hr1G021750.2 , HORVU6Hr1G021750.5 , HORVU6Hr1G021750.4 , HORVU6Hr1G021750.6
Wheat TraesCS6A02G119900 , TraesCS6D02G109800 , TraesCS6D02G109800 , TraesCS7D02G417600 , TraesCS7A02G423900 , TraesCS7B02G326200 , TraesCS6B02G148200
Populus -


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cDNA sequences
Sobic.004G041500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
2 Sobic.001G287800 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
3 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
4 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
5 Sobic.001G356500 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
6 Sobic.010G240900 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.003G220200 protein kinase family protein, putative, expressed K17541: SCY1-like protein 2
8 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
9 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
10 Sobic.006G261800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
11 Sobic.001G206100 expressed protein -
12 Sobic.007G160600 CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
13 Sobic.001G395500 SET domain containing protein, expressed K11430: [histone H3]-lysine27 N-trimethyltransferase EZH2
14 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
15 Sobic.008G101800 expressed protein -
16 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
17 Sobic.002G320500 MYB family transcription factor, putative, expressed -
18 Sobic.001G131800 expressed protein K15186: ELL-associated factor
19 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
20 Sobic.006G082600 OsFBX133 - F-box domain containing protein, expressed K10295: F-box protein 9


Gene co-expression network
sample Sobic004G041500 Sobic004G041500 Sobic003G073000 Sobic003G073000 Sobic004G041500--Sobic003G073000 Sobic001G287800 Sobic001G287800 Sobic004G041500--Sobic001G287800 Sobic001G251700 Sobic001G251700 Sobic004G041500--Sobic001G251700 Sobic004G349900 Sobic004G349900 Sobic004G041500--Sobic004G349900 Sobic001G356500 Sobic001G356500 Sobic004G041500--Sobic001G356500 Sobic010G240900 Sobic010G240900 Sobic004G041500--Sobic010G240900 Sobic003G220200 Sobic003G220200 Sobic004G041500--Sobic003G220200 Sobic007G056500 Sobic007G056500 Sobic004G041500--Sobic007G056500 Sobic004G257400 Sobic004G257400 Sobic004G041500--Sobic004G257400 Sobic001G206100 Sobic001G206100 Sobic003G073000--Sobic001G206100 Sobic003G073000--Sobic004G257400 Sobic003G073000--Sobic004G041500 Sobic007G185900 Sobic007G185900 Sobic003G073000--Sobic007G185900 Sobic006G186400 Sobic006G186400 Sobic003G073000--Sobic006G186400 Sobic003G073000--Sobic004G349900 Sobic001G408700 Sobic001G408700 Sobic003G073000--Sobic001G408700 Sobic001G517500 Sobic001G517500 Sobic003G073000--Sobic001G517500 Sobic003G073000--Sobic001G251700 Sobic001G287800--Sobic004G041500 Sobic001G287800--Sobic003G073000 Sobic004G116600 Sobic004G116600 Sobic001G287800--Sobic004G116600 Sobic001G287800--Sobic006G186400 Sobic001G425000 Sobic001G425000 Sobic001G287800--Sobic001G425000 Sobic001G287800--Sobic007G056500 Sobic004G094300 Sobic004G094300 Sobic001G287800--Sobic004G094300 Sobic004G180900 Sobic004G180900 Sobic001G287800--Sobic004G180900 Sobic010G243400 Sobic010G243400 Sobic001G287800--Sobic010G243400 Sobic007G137900 Sobic007G137900 Sobic001G251700--Sobic007G137900 Sobic003G200200 Sobic003G200200 Sobic001G251700--Sobic003G200200 Sobic002G157300 Sobic002G157300 Sobic001G251700--Sobic002G157300 Sobic002G157000 Sobic002G157000 Sobic001G251700--Sobic002G157000 Sobic006G082600 Sobic006G082600 Sobic001G251700--Sobic006G082600 Sobic002G248400 Sobic002G248400 Sobic001G251700--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic001G251700--Sobic002G320500 Sobic003G268300 Sobic003G268300 Sobic001G251700--Sobic003G268300 Sobic001G251700--Sobic003G220200 Sobic004G349900--Sobic007G137900 Sobic004G349900--Sobic002G157300 Sobic006G128800 Sobic006G128800 Sobic004G349900--Sobic006G128800 Sobic004G349900--Sobic001G206100 Sobic004G349900--Sobic003G220200 Sobic007G011400 Sobic007G011400 Sobic004G349900--Sobic007G011400 Sobic003G261300 Sobic003G261300 Sobic004G349900--Sobic003G261300 Sobic008G116500 Sobic008G116500 Sobic004G349900--Sobic008G116500 Sobic004G349900--Sobic007G185900 Sobic003G173950 Sobic003G173950 Sobic001G356500--Sobic003G173950 Sobic001G356500--Sobic001G206100 Sobic007G065400 Sobic007G065400 Sobic001G356500--Sobic007G065400 Sobic002G264200 Sobic002G264200 Sobic001G356500--Sobic002G264200 Sobic001G356500--Sobic002G320500 Sobic003G170100 Sobic003G170100 Sobic001G356500--Sobic003G170100 Sobic002G121600 Sobic002G121600 Sobic001G356500--Sobic002G121600 Sobic001G257300 Sobic001G257300 Sobic001G356500--Sobic001G257300 Sobic002G161000 Sobic002G161000 Sobic001G356500--Sobic002G161000 Sobic007G207400 Sobic007G207400 Sobic010G240900--Sobic007G207400 Sobic010G240900--Sobic004G041500 Sobic004G117900 Sobic004G117900 Sobic010G240900--Sobic004G117900 Sobic001G297500 Sobic001G297500 Sobic010G240900--Sobic001G297500 Sobic003G341400 Sobic003G341400 Sobic010G240900--Sobic003G341400 Sobic001G046200 Sobic001G046200 Sobic010G240900--Sobic001G046200 Sobic003G131400 Sobic003G131400 Sobic010G240900--Sobic003G131400 Sobic001G492300 Sobic001G492300 Sobic010G240900--Sobic001G492300 Sobic009G205200 Sobic009G205200 Sobic010G240900--Sobic009G205200 Sobic007G145200 Sobic007G145200 Sobic003G220200--Sobic007G145200 Sobic003G220200--Sobic002G157300 Sobic003G220200--Sobic002G157000 Sobic003G220200--Sobic002G320500 Sobic003G220200--Sobic007G137900 Sobic003G220200--Sobic001G251700 Sobic003G220200--Sobic007G011400 Sobic003G220200--Sobic004G349900 Sobic001G107500 Sobic001G107500 Sobic003G220200--Sobic001G107500 Sobic007G056500--Sobic006G186400 Sobic002G034600 Sobic002G034600 Sobic007G056500--Sobic002G034600 Sobic001G042200 Sobic001G042200 Sobic007G056500--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic007G056500--Sobic004G180900 Sobic001G395100 Sobic001G395100 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic006G121300 Sobic006G121300 Sobic007G056500--Sobic006G121300 Sobic004G257400--Sobic002G248400 Sobic003G108700 Sobic003G108700 Sobic004G257400--Sobic003G108700 Sobic008G054500 Sobic008G054500 Sobic004G257400--Sobic008G054500 Sobic003G445400 Sobic003G445400 Sobic004G257400--Sobic003G445400 Sobic007G026300 Sobic007G026300 Sobic004G257400--Sobic007G026300 Sobic004G257400--Sobic003G073000 Sobic001G090400 Sobic001G090400 Sobic004G257400--Sobic001G090400 Sobic007G167500 Sobic007G167500 Sobic004G257400--Sobic007G167500 Sobic004G257400--Sobic001G251700
Octagon: transcription factors


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