Gene annotation
Transcriptome id Sobic.006G261800.1
Synonym Sb06g032480
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt C5YA51
Pfam PF15663
Panther DB PTHR15725 PTHR15725:SF3
NCBI CDD KOG4791; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02160 : CCCH-type zinc finger family protein
RAP-DB (Rice) LOC_Os04g57600.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a057352
Brachypodium PNT62114 , KQJ85225
Barley HORVU2Hr1G121020.1 , HORVU2Hr1G121020.2 , HORVU2Hr1G121020.3
Wheat TraesCS2B02G578700 , TraesCS2A02G547900 , TraesCS2D02G549000
Populus -


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cDNA sequences
Sobic.006G261800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
2 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
3 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
4 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
5 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
6 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
7 Sobic.006G082600 OsFBX133 - F-box domain containing protein, expressed K10295: F-box protein 9
8 Sobic.002G262600 protein kinase, putative, expressed K13436: pto-interacting protein 1
9 Sobic.007G167500 expressed protein -
10 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1
11 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
12 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
13 Sobic.007G104800 expressed protein -
14 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
15 Sobic.003G298100 one zinc finger protein, putative, expressed -
16 Sobic.002G248400 ENT domain containing protein, expressed -
17 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
18 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
19 Sobic.002G320500 MYB family transcription factor, putative, expressed -
20 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31


Gene co-expression network
sample Sobic006G261800 Sobic006G261800 Sobic001G512700 Sobic001G512700 Sobic006G261800--Sobic001G512700 Sobic001G107500 Sobic001G107500 Sobic006G261800--Sobic001G107500 Sobic007G026300 Sobic007G026300 Sobic006G261800--Sobic007G026300 Sobic004G257400 Sobic004G257400 Sobic006G261800--Sobic004G257400 Sobic003G248200 Sobic003G248200 Sobic006G261800--Sobic003G248200 Sobic002G350300 Sobic002G350300 Sobic006G261800--Sobic002G350300 Sobic006G082600 Sobic006G082600 Sobic006G261800--Sobic006G082600 Sobic002G262600 Sobic002G262600 Sobic006G261800--Sobic002G262600 Sobic007G167500 Sobic007G167500 Sobic006G261800--Sobic007G167500 Sobic008G047800 Sobic008G047800 Sobic001G512700--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G512700--Sobic002G006900 Sobic001G512700--Sobic003G248200 Sobic001G497300 Sobic001G497300 Sobic001G512700--Sobic001G497300 Sobic007G118600 Sobic007G118600 Sobic001G512700--Sobic007G118600 Sobic004G021100 Sobic004G021100 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600 Sobic002G320500 Sobic002G320500 Sobic001G107500--Sobic002G320500 Sobic006G133800 Sobic006G133800 Sobic001G107500--Sobic006G133800 Sobic002G157000 Sobic002G157000 Sobic001G107500--Sobic002G157000 Sobic009G065100 Sobic009G065100 Sobic001G107500--Sobic009G065100 Sobic001G090400 Sobic001G090400 Sobic001G107500--Sobic001G090400 Sobic010G056200 Sobic010G056200 Sobic001G107500--Sobic010G056200 Sobic001G107500--Sobic001G497300 Sobic007G104800 Sobic007G104800 Sobic001G107500--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic001G107500--Sobic004G205600 Sobic007G026300--Sobic004G021100 Sobic007G026300--Sobic004G205600 Sobic007G026300--Sobic001G512700 Sobic007G026300--Sobic007G104800 Sobic007G026300--Sobic004G257400 Sobic007G026300--Sobic001G497300 Sobic007G200600 Sobic007G200600 Sobic007G026300--Sobic007G200600 Sobic007G026300--Sobic001G090400 Sobic004G057400 Sobic004G057400 Sobic007G026300--Sobic004G057400 Sobic002G248400 Sobic002G248400 Sobic004G257400--Sobic002G248400 Sobic003G108700 Sobic003G108700 Sobic004G257400--Sobic003G108700 Sobic008G054500 Sobic008G054500 Sobic004G257400--Sobic008G054500 Sobic003G445400 Sobic003G445400 Sobic004G257400--Sobic003G445400 Sobic004G257400--Sobic007G026300 Sobic003G073000 Sobic003G073000 Sobic004G257400--Sobic003G073000 Sobic004G257400--Sobic001G090400 Sobic004G257400--Sobic007G167500 Sobic001G251700 Sobic001G251700 Sobic004G257400--Sobic001G251700 Sobic003G248200--Sobic001G512700 Sobic001G356600 Sobic001G356600 Sobic003G248200--Sobic001G356600 Sobic008G179700 Sobic008G179700 Sobic003G248200--Sobic008G179700 Sobic004G066200 Sobic004G066200 Sobic003G248200--Sobic004G066200 Sobic003G248200--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic003G248200--Sobic006G200600 Sobic003G081000 Sobic003G081000 Sobic003G248200--Sobic003G081000 Sobic004G274200 Sobic004G274200 Sobic003G248200--Sobic004G274200 Sobic003G248200--Sobic002G297200 Sobic002G350300--Sobic008G179700 Sobic009G205200 Sobic009G205200 Sobic002G350300--Sobic009G205200 Sobic009G179700 Sobic009G179700 Sobic002G350300--Sobic009G179700 Sobic002G350300--Sobic001G107500 Sobic002G350300--Sobic001G512700 Sobic007G132400 Sobic007G132400 Sobic002G350300--Sobic007G132400 Sobic010G028300 Sobic010G028300 Sobic002G350300--Sobic010G028300 Sobic001G119300 Sobic001G119300 Sobic002G350300--Sobic001G119300 Sobic006G088100 Sobic006G088100 Sobic002G350300--Sobic006G088100 Sobic001G162300 Sobic001G162300 Sobic006G082600--Sobic001G162300 Sobic007G178700 Sobic007G178700 Sobic006G082600--Sobic007G178700 Sobic007G037100 Sobic007G037100 Sobic006G082600--Sobic007G037100 Sobic006G082600--Sobic001G251700 Sobic004G196700 Sobic004G196700 Sobic006G082600--Sobic004G196700 Sobic009G134500 Sobic009G134500 Sobic006G082600--Sobic009G134500 Sobic010G124001 Sobic010G124001 Sobic006G082600--Sobic010G124001 Sobic009G127900 Sobic009G127900 Sobic006G082600--Sobic009G127900 Sobic006G082600--Sobic002G157000 Sobic001G333200 Sobic001G333200 Sobic002G262600--Sobic001G333200 Sobic002G262600--Sobic002G350300 Sobic006G209500 Sobic006G209500 Sobic002G262600--Sobic006G209500 Sobic004G049100 Sobic004G049100 Sobic002G262600--Sobic004G049100 Sobic002G262600--Sobic006G261800 Sobic004G231400 Sobic004G231400 Sobic002G262600--Sobic004G231400 Sobic002G262600--Sobic006G088100 Sobic004G117900 Sobic004G117900 Sobic002G262600--Sobic004G117900 Sobic007G160600 Sobic007G160600 Sobic002G262600--Sobic007G160600 Sobic003G119000 Sobic003G119000 Sobic007G167500--Sobic003G119000 Sobic007G167500--Sobic002G006900 Sobic003G397800 Sobic003G397800 Sobic007G167500--Sobic003G397800 Sobic007G096600 Sobic007G096600 Sobic007G167500--Sobic007G096600 Sobic010G101800 Sobic010G101800 Sobic007G167500--Sobic010G101800 Sobic007G065400 Sobic007G065400 Sobic007G167500--Sobic007G065400 Sobic009G210500 Sobic009G210500 Sobic007G167500--Sobic009G210500 Sobic003G332800 Sobic003G332800 Sobic007G167500--Sobic003G332800 Sobic003G372700 Sobic003G372700 Sobic007G167500--Sobic003G372700
Octagon: transcription factors


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