Gene annotation
Transcriptome id Sobic.002G399100.2,Sobic.002G399100.1
Synonym Sb02g041380
Functional annotation zinc finger, RING-type, putative, expressed
UniProt A0A1W0W7K2 , C5X430
Pfam PF13920 PF12483
Panther DB PTHR12183 PTHR12183:SF18
NCBI CDD KOG1571; Predicted E3 ubiquitin ligase
KEGG Orthology K15688; E3 ubiquitin-protein ligase MUL1
Gene Ontology GO:0007005; mitochondrion organization GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT1G63900 : E3 Ubiquitin ligase family protein
RAP-DB (Rice) LOC_Os07g45350.2 : zinc finger, RING-type, putative, expressed
MaizeGDB (Corn) Zm00025a015329 , Zm00025a048982
Brachypodium KQK14916 , KQK14917
Barley HORVU2Hr1G024550.5 , HORVU2Hr1G024550.8 , HORVU2Hr1G024550.4 , HORVU2Hr1G024550.6 , HORVU2Hr1G024550.7 , HORVU2Hr1G024550.1 , HORVU2Hr1G024550.2 , HORVU2Hr1G024550.3
Wheat TraesCS2D02G141100 , TraesCS2A02G138100 , TraesCS2A02G138100 , TraesCS2B02G162000 , TraesCS2D02G141100
Populus -


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cDNA sequences
Sobic.002G399100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G413500 expressed protein -
2 Sobic.001G497300 protein kinase domain containing protein, expressed -
3 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
4 Sobic.007G104800 expressed protein -
5 Sobic.004G205600 bromodomain domain containing protein, expressed -
6 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
7 Sobic.003G298100 one zinc finger protein, putative, expressed -
8 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
9 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
10 Sobic.001G214300 expressed protein -
11 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
12 Sobic.005G023900 expressed protein -
13 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
14 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
15 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
16 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
18 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
19 Sobic.003G332800 GTPase-activating protein, putative, expressed -
20 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1


Gene co-expression network
sample Sobic002G399100 Sobic002G399100 Sobic001G413500 Sobic001G413500 Sobic002G399100--Sobic001G413500 Sobic001G497300 Sobic001G497300 Sobic002G399100--Sobic001G497300 Sobic001G512700 Sobic001G512700 Sobic002G399100--Sobic001G512700 Sobic007G104800 Sobic007G104800 Sobic002G399100--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic002G399100--Sobic004G205600 Sobic001G107500 Sobic001G107500 Sobic002G399100--Sobic001G107500 Sobic003G298100 Sobic003G298100 Sobic002G399100--Sobic003G298100 Sobic010G153700 Sobic010G153700 Sobic002G399100--Sobic010G153700 Sobic003G029700 Sobic003G029700 Sobic002G399100--Sobic003G029700 Sobic009G083900 Sobic009G083900 Sobic001G413500--Sobic009G083900 Sobic008G173900 Sobic008G173900 Sobic001G413500--Sobic008G173900 Sobic002G157000 Sobic002G157000 Sobic001G413500--Sobic002G157000 Sobic004G240800 Sobic004G240800 Sobic001G413500--Sobic004G240800 Sobic001G413500--Sobic001G497300 Sobic005G023900 Sobic005G023900 Sobic001G413500--Sobic005G023900 Sobic003G200200 Sobic003G200200 Sobic001G413500--Sobic003G200200 Sobic004G145500 Sobic004G145500 Sobic001G413500--Sobic004G145500 Sobic003G268300 Sobic003G268300 Sobic001G413500--Sobic003G268300 Sobic001G497300--Sobic007G104800 Sobic001G497300--Sobic001G512700 Sobic002G006900 Sobic002G006900 Sobic001G497300--Sobic002G006900 Sobic006G237400 Sobic006G237400 Sobic001G497300--Sobic006G237400 Sobic001G497300--Sobic004G205600 Sobic001G497300--Sobic001G413500 Sobic008G047800 Sobic008G047800 Sobic001G497300--Sobic008G047800 Sobic001G497300--Sobic005G023900 Sobic001G497300--Sobic002G157000 Sobic001G512700--Sobic008G047800 Sobic001G512700--Sobic002G006900 Sobic003G248200 Sobic003G248200 Sobic001G512700--Sobic003G248200 Sobic001G512700--Sobic001G497300 Sobic007G118600 Sobic007G118600 Sobic001G512700--Sobic007G118600 Sobic004G021100 Sobic004G021100 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600 Sobic007G104800--Sobic001G497300 Sobic007G104800--Sobic004G021100 Sobic001G119300 Sobic001G119300 Sobic007G104800--Sobic001G119300 Sobic003G187400 Sobic003G187400 Sobic007G104800--Sobic003G187400 Sobic007G200600 Sobic007G200600 Sobic007G104800--Sobic007G200600 Sobic007G104800--Sobic001G512700 Sobic007G104800--Sobic004G205600 Sobic007G026300 Sobic007G026300 Sobic007G104800--Sobic007G026300 Sobic007G104800--Sobic001G107500 Sobic004G057400 Sobic004G057400 Sobic004G205600--Sobic004G057400 Sobic004G205600--Sobic001G497300 Sobic001G090400 Sobic001G090400 Sobic004G205600--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic004G205600--Sobic003G081000 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic004G205600--Sobic002G157000 Sobic002G320500 Sobic002G320500 Sobic001G107500--Sobic002G320500 Sobic006G133800 Sobic006G133800 Sobic001G107500--Sobic006G133800 Sobic001G107500--Sobic002G157000 Sobic001G107500--Sobic009G065100 Sobic001G107500--Sobic001G090400 Sobic010G056200 Sobic010G056200 Sobic001G107500--Sobic010G056200 Sobic001G107500--Sobic001G497300 Sobic001G107500--Sobic007G104800 Sobic001G107500--Sobic004G205600 Sobic002G248400 Sobic002G248400 Sobic003G298100--Sobic002G248400 Sobic003G298100--Sobic002G157000 Sobic003G298100--Sobic004G205600 Sobic003G298100--Sobic001G107500 Sobic003G298100--Sobic002G320500 Sobic003G108700 Sobic003G108700 Sobic003G298100--Sobic003G108700 Sobic003G298100--Sobic007G104800 Sobic003G298100--Sobic001G497300 Sobic003G298100--Sobic002G399100 Sobic002G315200 Sobic002G315200 Sobic010G153700--Sobic002G315200 Sobic009G026500 Sobic009G026500 Sobic010G153700--Sobic009G026500 Sobic009G191000 Sobic009G191000 Sobic010G153700--Sobic009G191000 Sobic010G153700--Sobic001G512700 Sobic002G008900 Sobic002G008900 Sobic010G153700--Sobic002G008900 Sobic002G134200 Sobic002G134200 Sobic010G153700--Sobic002G134200 Sobic010G153700--Sobic002G006900 Sobic001G071400 Sobic001G071400 Sobic010G153700--Sobic001G071400 Sobic001G214300 Sobic001G214300 Sobic010G153700--Sobic001G214300 Sobic004G341900 Sobic004G341900 Sobic003G029700--Sobic004G341900 Sobic003G029700--Sobic001G214300 Sobic010G013800 Sobic010G013800 Sobic003G029700--Sobic010G013800 Sobic003G029700--Sobic008G047800 Sobic003G029700--Sobic001G497300 Sobic003G029700--Sobic002G006900 Sobic003G029700--Sobic009G026500 Sobic003G029700--Sobic009G191000 Sobic001G205200 Sobic001G205200 Sobic003G029700--Sobic001G205200
Octagon: transcription factors


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