Gene annotation
Transcriptome id Sobic.001G287800.1
Synonym Sb01g028250, AGD8
Functional annotation GTPase-activating protein, putative, expressed
UniProt C5WRB2
Pfam PF01412
Panther DB PTHR23180 PTHR23180:SF275
NCBI CDD KOG0706; Predicted GTPase-activating protein
KEGG Orthology K12493; ADP-ribosylation factor GTPase-activating protein 2/3
Gene Ontology GO:0005096; GTPase activator activity


Orthologs (automatic annotation)
TAIR AT4G17890 : ARF-GAP domain 8
RAP-DB (Rice) LOC_Os10g42420.1 : GTPase-activating protein, putative, expressed
MaizeGDB (Corn) Zm00025a051821 , Zm00025a003467
Brachypodium KQJ97933
Barley -
Wheat TraesCS1A02G193000 , TraesCS1D02G196700 , TraesCS1B02G207900
Populus -


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cDNA sequences
Sobic.001G287800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G041500 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
2 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
3 Sobic.004G116600 E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -
4 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
5 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
6 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
7 Sobic.004G094300 protein kinase domain containing protein, expressed K04424: ZAK, sterile alpha motif and leucine zipper containing kinase AZK
8 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
9 Sobic.010G243400 expressed protein -
10 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
11 Sobic.006G130200 expressed protein -
12 Sobic.010G005700 expressed protein -
13 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
14 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
15 Sobic.001G202266 - -
16 Sobic.008G173400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
17 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
18 Sobic.009G017200 transporter family protein, putative, expressed K15276: SLC35B2, solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
19 Sobic.006G254600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
20 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16


Gene co-expression network
sample Sobic001G287800 Sobic001G287800 Sobic004G041500 Sobic004G041500 Sobic001G287800--Sobic004G041500 Sobic003G073000 Sobic003G073000 Sobic001G287800--Sobic003G073000 Sobic004G116600 Sobic004G116600 Sobic001G287800--Sobic004G116600 Sobic006G186400 Sobic006G186400 Sobic001G287800--Sobic006G186400 Sobic001G425000 Sobic001G425000 Sobic001G287800--Sobic001G425000 Sobic007G056500 Sobic007G056500 Sobic001G287800--Sobic007G056500 Sobic004G094300 Sobic004G094300 Sobic001G287800--Sobic004G094300 Sobic004G180900 Sobic004G180900 Sobic001G287800--Sobic004G180900 Sobic010G243400 Sobic010G243400 Sobic001G287800--Sobic010G243400 Sobic004G041500--Sobic003G073000 Sobic004G041500--Sobic001G287800 Sobic001G251700 Sobic001G251700 Sobic004G041500--Sobic001G251700 Sobic004G349900 Sobic004G349900 Sobic004G041500--Sobic004G349900 Sobic001G356500 Sobic001G356500 Sobic004G041500--Sobic001G356500 Sobic010G240900 Sobic010G240900 Sobic004G041500--Sobic010G240900 Sobic003G220200 Sobic003G220200 Sobic004G041500--Sobic003G220200 Sobic004G041500--Sobic007G056500 Sobic004G257400 Sobic004G257400 Sobic004G041500--Sobic004G257400 Sobic001G206100 Sobic001G206100 Sobic003G073000--Sobic001G206100 Sobic003G073000--Sobic004G257400 Sobic003G073000--Sobic004G041500 Sobic007G185900 Sobic007G185900 Sobic003G073000--Sobic007G185900 Sobic003G073000--Sobic006G186400 Sobic003G073000--Sobic004G349900 Sobic001G408700 Sobic001G408700 Sobic003G073000--Sobic001G408700 Sobic001G517500 Sobic001G517500 Sobic003G073000--Sobic001G517500 Sobic003G073000--Sobic001G251700 Sobic001G202266 Sobic001G202266 Sobic004G116600--Sobic001G202266 Sobic004G116600--Sobic001G287800 Sobic004G116600--Sobic004G180900 Sobic006G130200 Sobic006G130200 Sobic004G116600--Sobic006G130200 Sobic005G049000 Sobic005G049000 Sobic004G116600--Sobic005G049000 Sobic006G144000 Sobic006G144000 Sobic004G116600--Sobic006G144000 Sobic004G218300 Sobic004G218300 Sobic004G116600--Sobic004G218300 Sobic001G017200 Sobic001G017200 Sobic004G116600--Sobic001G017200 Sobic007G192400 Sobic007G192400 Sobic004G116600--Sobic007G192400 Sobic008G153000 Sobic008G153000 Sobic006G186400--Sobic008G153000 Sobic001G176200 Sobic001G176200 Sobic006G186400--Sobic001G176200 Sobic004G067700 Sobic004G067700 Sobic006G186400--Sobic004G067700 Sobic008G173100 Sobic008G173100 Sobic006G186400--Sobic008G173100 Sobic006G186400--Sobic007G056500 Sobic002G260400 Sobic002G260400 Sobic006G186400--Sobic002G260400 Sobic006G046700 Sobic006G046700 Sobic006G186400--Sobic006G046700 Sobic006G186400--Sobic003G073000 Sobic006G186400--Sobic001G408700 Sobic002G197100 Sobic002G197100 Sobic001G425000--Sobic002G197100 Sobic001G425000--Sobic001G176200 Sobic001G425000--Sobic006G046700 Sobic003G445400 Sobic003G445400 Sobic001G425000--Sobic003G445400 Sobic005G015900 Sobic005G015900 Sobic001G425000--Sobic005G015900 Sobic008G152900 Sobic008G152900 Sobic001G425000--Sobic008G152900 Sobic001G425000--Sobic001G202266 Sobic001G425000--Sobic006G186400 Sobic001G425000--Sobic004G180900 Sobic007G056500--Sobic006G186400 Sobic002G034600 Sobic002G034600 Sobic007G056500--Sobic002G034600 Sobic001G042200 Sobic001G042200 Sobic007G056500--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic007G056500--Sobic004G180900 Sobic001G395100 Sobic001G395100 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic006G121300 Sobic006G121300 Sobic007G056500--Sobic006G121300 Sobic009G205200 Sobic009G205200 Sobic004G094300--Sobic009G205200 Sobic002G350300 Sobic002G350300 Sobic004G094300--Sobic002G350300 Sobic008G165000 Sobic008G165000 Sobic004G094300--Sobic008G165000 Sobic009G228700 Sobic009G228700 Sobic004G094300--Sobic009G228700 Sobic004G121100 Sobic004G121100 Sobic004G094300--Sobic004G121100 Sobic007G207400 Sobic007G207400 Sobic004G094300--Sobic007G207400 Sobic004G066200 Sobic004G066200 Sobic004G094300--Sobic004G066200 Sobic004G094300--Sobic010G243400 Sobic004G003401 Sobic004G003401 Sobic004G094300--Sobic004G003401 Sobic009G017200 Sobic009G017200 Sobic004G180900--Sobic009G017200 Sobic004G180900--Sobic007G056500 Sobic004G180900--Sobic001G425000 Sobic004G345400 Sobic004G345400 Sobic004G180900--Sobic004G345400 Sobic004G180900--Sobic006G186400 Sobic008G058800 Sobic008G058800 Sobic004G180900--Sobic008G058800 Sobic007G026000 Sobic007G026000 Sobic004G180900--Sobic007G026000 Sobic004G180900--Sobic010G077500 Sobic003G381600 Sobic003G381600 Sobic004G180900--Sobic003G381600 Sobic010G243400--Sobic008G165000 Sobic007G056100 Sobic007G056100 Sobic010G243400--Sobic007G056100 Sobic010G261600 Sobic010G261600 Sobic010G243400--Sobic010G261600 Sobic003G243700 Sobic003G243700 Sobic010G243400--Sobic003G243700 Sobic009G041700 Sobic009G041700 Sobic010G243400--Sobic009G041700 Sobic009G224000 Sobic009G224000 Sobic010G243400--Sobic009G224000 Sobic010G243400--Sobic004G003401 Sobic008G173400 Sobic008G173400 Sobic010G243400--Sobic008G173400 Sobic001G421400 Sobic001G421400 Sobic010G243400--Sobic001G421400
Octagon: transcription factors


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