Gene annotation
Transcriptome id Sobic.008G173400.2,Sobic.008G173400.4,Sobic.008G173400.1,Sobic.008G173400.3
Synonym Sb08g021810
Functional annotation initiation factor 2 subunit family domain containing protein, expressed
UniProt C5YSD0
Pfam PF01008
Panther DB PTHR10233 PTHR10233:SF19
NCBI CDD -
KEGG Orthology K03680; translation initiation factor eIF-2B subunit delta
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G38640 : NagB/RpiA/CoA transferase-like superfamily protein
RAP-DB (Rice) LOC_Os12g42260.2,LOC_Os12g42260.1 : initiation factor 2 subunit family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004719
Brachypodium -
Barley -
Wheat TraesCS5B02G376300
Populus -


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cDNA sequences
Sobic.008G173400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G243400 expressed protein -
2 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
3 Sobic.001G114000 expressed protein -
4 Sobic.001G106100 expressed protein -
5 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
6 Sobic.004G003401 - -
7 Sobic.003G398400 expressed protein -
8 Sobic.009G041700 Fibronectin type III domain containing protein, expressed -
9 Sobic.008G165000 LSD1 zinc finger domain containing protein, expressed -
10 Sobic.009G224000 OsQSOXL1 quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed K10758: thiol oxidase
11 Sobic.001G287800 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
12 Sobic.006G130200 expressed protein -
13 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
14 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
15 Sobic.003G243700 vacuolar protein-sorting-associated protein 25, putative, expressed K12189: VPS25, ESCRT-II complex subunit VPS25
16 Sobic.010G264400 CAMK_CAMK_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
17 Sobic.004G007300 expressed protein -
18 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
19 Sobic.006G215900 OsFBX172 - F-box domain containing protein, expressed -
20 Sobic.009G160600 Yip1 domain containing protein, expressed -


Gene co-expression network
sample Sobic008G173400 Sobic008G173400 Sobic010G243400 Sobic010G243400 Sobic008G173400--Sobic010G243400 Sobic004G067700 Sobic004G067700 Sobic008G173400--Sobic004G067700 Sobic001G114000 Sobic001G114000 Sobic008G173400--Sobic001G114000 Sobic001G106100 Sobic001G106100 Sobic008G173400--Sobic001G106100 Sobic002G197100 Sobic002G197100 Sobic008G173400--Sobic002G197100 Sobic004G003401 Sobic004G003401 Sobic008G173400--Sobic004G003401 Sobic003G398400 Sobic003G398400 Sobic008G173400--Sobic003G398400 Sobic009G041700 Sobic009G041700 Sobic008G173400--Sobic009G041700 Sobic008G165000 Sobic008G165000 Sobic008G173400--Sobic008G165000 Sobic010G243400--Sobic008G165000 Sobic007G056100 Sobic007G056100 Sobic010G243400--Sobic007G056100 Sobic010G261600 Sobic010G261600 Sobic010G243400--Sobic010G261600 Sobic003G243700 Sobic003G243700 Sobic010G243400--Sobic003G243700 Sobic010G243400--Sobic009G041700 Sobic009G224000 Sobic009G224000 Sobic010G243400--Sobic009G224000 Sobic010G243400--Sobic004G003401 Sobic010G243400--Sobic008G173400 Sobic001G421400 Sobic001G421400 Sobic010G243400--Sobic001G421400 Sobic004G067700--Sobic001G114000 Sobic006G173100 Sobic006G173100 Sobic004G067700--Sobic006G173100 Sobic002G370900 Sobic002G370900 Sobic004G067700--Sobic002G370900 Sobic001G512700 Sobic001G512700 Sobic004G067700--Sobic001G512700 Sobic007G217000 Sobic007G217000 Sobic004G067700--Sobic007G217000 Sobic009G126400 Sobic009G126400 Sobic004G067700--Sobic009G126400 Sobic005G045300 Sobic005G045300 Sobic004G067700--Sobic005G045300 Sobic003G008500 Sobic003G008500 Sobic004G067700--Sobic003G008500 Sobic002G310200 Sobic002G310200 Sobic004G067700--Sobic002G310200 Sobic001G114000--Sobic007G217000 Sobic002G112700 Sobic002G112700 Sobic001G114000--Sobic002G112700 Sobic001G065000 Sobic001G065000 Sobic001G114000--Sobic001G065000 Sobic001G114000--Sobic004G067700 Sobic009G166300 Sobic009G166300 Sobic001G114000--Sobic009G166300 Sobic008G047800 Sobic008G047800 Sobic001G114000--Sobic008G047800 Sobic004G072100 Sobic004G072100 Sobic001G114000--Sobic004G072100 Sobic005G118600 Sobic005G118600 Sobic001G114000--Sobic005G118600 Sobic001G114000--Sobic009G126400 Sobic006G215900 Sobic006G215900 Sobic001G106100--Sobic006G215900 Sobic001G106100--Sobic008G173400 Sobic001G042200 Sobic001G042200 Sobic001G106100--Sobic001G042200 Sobic008G058800 Sobic008G058800 Sobic001G106100--Sobic008G058800 Sobic004G246100 Sobic004G246100 Sobic001G106100--Sobic004G246100 Sobic001G106100--Sobic002G197100 Sobic003G074400 Sobic003G074400 Sobic001G106100--Sobic003G074400 Sobic007G056500 Sobic007G056500 Sobic001G106100--Sobic007G056500 Sobic007G189000 Sobic007G189000 Sobic001G106100--Sobic007G189000 Sobic004G007300 Sobic004G007300 Sobic002G197100--Sobic004G007300 Sobic002G197100--Sobic006G173100 Sobic004G345700 Sobic004G345700 Sobic002G197100--Sobic004G345700 Sobic001G176200 Sobic001G176200 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic001G425000 Sobic001G425000 Sobic002G197100--Sobic001G425000 Sobic003G248500 Sobic003G248500 Sobic002G197100--Sobic003G248500 Sobic001G514000 Sobic001G514000 Sobic002G197100--Sobic001G514000 Sobic002G197100--Sobic002G370900 Sobic009G228700 Sobic009G228700 Sobic004G003401--Sobic009G228700 Sobic002G303600 Sobic002G303600 Sobic004G003401--Sobic002G303600 Sobic001G091300 Sobic001G091300 Sobic004G003401--Sobic001G091300 Sobic004G003401--Sobic010G243400 Sobic006G180000 Sobic006G180000 Sobic004G003401--Sobic006G180000 Sobic003G312200 Sobic003G312200 Sobic004G003401--Sobic003G312200 Sobic004G003401--Sobic001G114000 Sobic004G003401--Sobic009G041700 Sobic006G200600 Sobic006G200600 Sobic004G003401--Sobic006G200600 Sobic004G218300 Sobic004G218300 Sobic003G398400--Sobic004G218300 Sobic006G130200 Sobic006G130200 Sobic003G398400--Sobic006G130200 Sobic004G084500 Sobic004G084500 Sobic003G398400--Sobic004G084500 Sobic003G394200 Sobic003G394200 Sobic003G398400--Sobic003G394200 Sobic002G164300 Sobic002G164300 Sobic003G398400--Sobic002G164300 Sobic010G213500 Sobic010G213500 Sobic003G398400--Sobic010G213500 Sobic010G074900 Sobic010G074900 Sobic003G398400--Sobic010G074900 Sobic004G122900 Sobic004G122900 Sobic003G398400--Sobic004G122900 Sobic003G407100 Sobic003G407100 Sobic003G398400--Sobic003G407100 Sobic009G041700--Sobic001G114000 Sobic004G321100 Sobic004G321100 Sobic009G041700--Sobic004G321100 Sobic005G177700 Sobic005G177700 Sobic009G041700--Sobic005G177700 Sobic005G138300 Sobic005G138300 Sobic009G041700--Sobic005G138300 Sobic007G218000 Sobic007G218000 Sobic009G041700--Sobic007G218000 Sobic009G041700--Sobic010G243400 Sobic006G167600 Sobic006G167600 Sobic009G041700--Sobic006G167600 Sobic009G041700--Sobic004G067700 Sobic009G124700 Sobic009G124700 Sobic009G041700--Sobic009G124700 Sobic008G165000--Sobic010G243400 Sobic006G254600 Sobic006G254600 Sobic008G165000--Sobic006G254600 Sobic001G489700 Sobic001G489700 Sobic008G165000--Sobic001G489700 Sobic002G378200 Sobic002G378200 Sobic008G165000--Sobic002G378200 Sobic001G085500 Sobic001G085500 Sobic008G165000--Sobic001G085500 Sobic004G094300 Sobic004G094300 Sobic008G165000--Sobic004G094300 Sobic002G040700 Sobic002G040700 Sobic008G165000--Sobic002G040700 Sobic001G512400 Sobic001G512400 Sobic008G165000--Sobic001G512400 Sobic001G522900 Sobic001G522900 Sobic008G165000--Sobic001G522900
Octagon: transcription factors


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