Gene annotation
Transcriptome id Sobic.009G041700.1,Sobic.009G041700.2
Synonym VRN5, Sb09g003500, VIL1
Functional annotation Fibronectin type III domain containing protein, expressed
UniProt A0A1B6P6M9
Pfam PF00041 PF07227
Panther DB PTHR21736 PTHR21736:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G24440 : Fibronectin type III domain-containing protein
RAP-DB (Rice) LOC_Os05g05310.1 : Fibronectin type III domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055390
Brachypodium KQK07559
Barley HORVU1Hr1G019570.1 , HORVU1Hr1G019570.3 , HORVU1Hr1G019570.5 , HORVU1Hr1G019570.4 , HORVU1Hr1G019570.6
Wheat TraesCS1D02G090400 , TraesCS1B02G108200 , TraesCS1A02G108900
Populus -


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cDNA sequences
Sobic.009G041700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G114000 expressed protein -
2 Sobic.004G321100 SAC domain containing protein, putative, expressed -
3 Sobic.005G177700 transmembrane protein 49, putative, expressed -
4 Sobic.005G138300 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
5 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
6 Sobic.010G243400 expressed protein -
7 Sobic.006G167600 heat shock protein DnaJ, putative, expressed -
8 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
9 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
10 Sobic.010G278200 expressed protein -
11 Sobic.004G003401 - -
12 Sobic.007G008900 SAC domain containing protein, putative, expressed -
13 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
14 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
15 Sobic.007G132100 myrosinase precursor, putative, expressed -
16 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
17 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
18 Sobic.009G228700 expressed protein -
19 Sobic.008G173400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
20 Sobic.007G172200 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed K18081: myotubularin-related protein 1/2


Gene co-expression network
sample Sobic009G041700 Sobic009G041700 Sobic001G114000 Sobic001G114000 Sobic009G041700--Sobic001G114000 Sobic004G321100 Sobic004G321100 Sobic009G041700--Sobic004G321100 Sobic005G177700 Sobic005G177700 Sobic009G041700--Sobic005G177700 Sobic005G138300 Sobic005G138300 Sobic009G041700--Sobic005G138300 Sobic007G218000 Sobic007G218000 Sobic009G041700--Sobic007G218000 Sobic010G243400 Sobic010G243400 Sobic009G041700--Sobic010G243400 Sobic006G167600 Sobic006G167600 Sobic009G041700--Sobic006G167600 Sobic004G067700 Sobic004G067700 Sobic009G041700--Sobic004G067700 Sobic009G124700 Sobic009G124700 Sobic009G041700--Sobic009G124700 Sobic007G217000 Sobic007G217000 Sobic001G114000--Sobic007G217000 Sobic002G112700 Sobic002G112700 Sobic001G114000--Sobic002G112700 Sobic001G065000 Sobic001G065000 Sobic001G114000--Sobic001G065000 Sobic001G114000--Sobic004G067700 Sobic009G166300 Sobic009G166300 Sobic001G114000--Sobic009G166300 Sobic008G047800 Sobic008G047800 Sobic001G114000--Sobic008G047800 Sobic004G072100 Sobic004G072100 Sobic001G114000--Sobic004G072100 Sobic005G118600 Sobic005G118600 Sobic001G114000--Sobic005G118600 Sobic009G126400 Sobic009G126400 Sobic001G114000--Sobic009G126400 Sobic001G441400 Sobic001G441400 Sobic004G321100--Sobic001G441400 Sobic004G321100--Sobic009G041700 Sobic003G404500 Sobic003G404500 Sobic004G321100--Sobic003G404500 Sobic007G008900 Sobic007G008900 Sobic004G321100--Sobic007G008900 Sobic004G321100--Sobic001G114000 Sobic001G451400 Sobic001G451400 Sobic004G321100--Sobic001G451400 Sobic004G321100--Sobic005G177700 Sobic007G172200 Sobic007G172200 Sobic004G321100--Sobic007G172200 Sobic003G118200 Sobic003G118200 Sobic004G321100--Sobic003G118200 Sobic003G316200 Sobic003G316200 Sobic005G177700--Sobic003G316200 Sobic007G056100 Sobic007G056100 Sobic005G177700--Sobic007G056100 Sobic002G355800 Sobic002G355800 Sobic005G177700--Sobic002G355800 Sobic006G077300 Sobic006G077300 Sobic005G177700--Sobic006G077300 Sobic005G177700--Sobic009G041700 Sobic001G253300 Sobic001G253300 Sobic005G177700--Sobic001G253300 Sobic004G228800 Sobic004G228800 Sobic005G177700--Sobic004G228800 Sobic003G365100 Sobic003G365100 Sobic005G177700--Sobic003G365100 Sobic002G268800 Sobic002G268800 Sobic005G177700--Sobic002G268800 Sobic003G444800 Sobic003G444800 Sobic005G138300--Sobic003G444800 Sobic005G138300--Sobic007G218000 Sobic005G138300--Sobic001G114000 Sobic005G138300--Sobic009G124700 Sobic002G103600 Sobic002G103600 Sobic005G138300--Sobic002G103600 SobicK028600 SobicK028600 Sobic005G138300--SobicK028600 Sobic005G138300--Sobic002G112700 Sobic004G265500 Sobic004G265500 Sobic005G138300--Sobic004G265500 Sobic002G164300 Sobic002G164300 Sobic005G138300--Sobic002G164300 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic007G218000--Sobic004G072100 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic008G165000 Sobic008G165000 Sobic010G243400--Sobic008G165000 Sobic010G243400--Sobic007G056100 Sobic010G261600 Sobic010G261600 Sobic010G243400--Sobic010G261600 Sobic003G243700 Sobic003G243700 Sobic010G243400--Sobic003G243700 Sobic010G243400--Sobic009G041700 Sobic009G224000 Sobic009G224000 Sobic010G243400--Sobic009G224000 Sobic004G003401 Sobic004G003401 Sobic010G243400--Sobic004G003401 Sobic008G173400 Sobic008G173400 Sobic010G243400--Sobic008G173400 Sobic001G421400 Sobic001G421400 Sobic010G243400--Sobic001G421400 Sobic004G274200 Sobic004G274200 Sobic006G167600--Sobic004G274200 Sobic006G167600--Sobic001G114000 Sobic006G167600--Sobic007G132100 Sobic006G167600--Sobic009G041700 Sobic010G034000 Sobic010G034000 Sobic006G167600--Sobic010G034000 Sobic010G236400 Sobic010G236400 Sobic006G167600--Sobic010G236400 Sobic001G452000 Sobic001G452000 Sobic006G167600--Sobic001G452000 Sobic006G167600--Sobic007G218000 Sobic007G119200 Sobic007G119200 Sobic006G167600--Sobic007G119200 Sobic004G067700--Sobic001G114000 Sobic006G173100 Sobic006G173100 Sobic004G067700--Sobic006G173100 Sobic002G370900 Sobic002G370900 Sobic004G067700--Sobic002G370900 Sobic001G512700 Sobic001G512700 Sobic004G067700--Sobic001G512700 Sobic004G067700--Sobic007G217000 Sobic004G067700--Sobic009G126400 Sobic005G045300 Sobic005G045300 Sobic004G067700--Sobic005G045300 Sobic003G008500 Sobic003G008500 Sobic004G067700--Sobic003G008500 Sobic002G310200 Sobic002G310200 Sobic004G067700--Sobic002G310200 Sobic009G124700--Sobic007G218000 Sobic009G124700--Sobic009G044800 Sobic003G443100 Sobic003G443100 Sobic009G124700--Sobic003G443100 Sobic009G177500 Sobic009G177500 Sobic009G124700--Sobic009G177500 Sobic007G075900 Sobic007G075900 Sobic009G124700--Sobic007G075900 Sobic009G124700--Sobic003G118200 Sobic009G124700--Sobic001G441400 Sobic009G124700--Sobic007G132100 Sobic009G124700--Sobic005G138300
Octagon: transcription factors


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