Gene annotation
Transcriptome id Sobic.005G177700.1
Synonym Sb05g023720
Functional annotation transmembrane protein 49, putative, expressed
UniProt C5Y5V1
Pfam PF09335
Panther DB PTHR10281 PTHR10281:SF44
NCBI CDD KOG1109; Vacuole membrane protein VMP1
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14950 : SNARE associated Golgi protein family
RAP-DB (Rice) LOC_Os01g57066.1 : transmembrane protein 49, putative, expressed
MaizeGDB (Corn) Zm00025a027294 , Zm00025a029434
Brachypodium KQK10052 , KQK10051
Barley HORVU3Hr1G076520.3 , HORVU3Hr1G076520.2 , HORVU3Hr1G076520.1 , HORVU3Hr1G076520.5 , HORVU3Hr1G076520.4
Wheat TraesCS3D02G312800 , TraesCS3A02G318400 , TraesCS3B02G347500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G316200 transmembrane protein 49, putative, expressed -
2 Sobic.007G056100 expressed protein K15077: elongin-A
3 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
4 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
5 Sobic.009G041700 Fibronectin type III domain containing protein, expressed -
6 Sobic.001G253300 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
7 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
8 Sobic.003G365100 hydrolase, alpha/beta fold family, putative, expressed -
9 Sobic.002G268800 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
10 Sobic.004G321100 SAC domain containing protein, putative, expressed -
11 Sobic.010G243400 expressed protein -
12 Sobic.002G306100 ubiquinol-cytochrome C chaperone family protein, putative, expressed K17662: CBP3, cytochrome b pre-mRNA-processing protein 3
13 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
14 Sobic.004G130400 OsPOP5 - Putative Prolyl Oligopeptidase homologue, expressed K01278: DPP4, dipeptidyl-peptidase 4
15 Sobic.010G184300 glycosyltransferase family protein, putative, expressed K00771: protein xylosyltransferase
16 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
17 Sobic.006G260500 expressed protein -
18 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
19 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
20 Sobic.003G270600 adaptor complexes medium subunit family domain containing protein, expressed K12393: AP-1 complex subunit mu


Gene co-expression network
sample Sobic005G177700 Sobic005G177700 Sobic003G316200 Sobic003G316200 Sobic005G177700--Sobic003G316200 Sobic007G056100 Sobic007G056100 Sobic005G177700--Sobic007G056100 Sobic002G355800 Sobic002G355800 Sobic005G177700--Sobic002G355800 Sobic006G077300 Sobic006G077300 Sobic005G177700--Sobic006G077300 Sobic009G041700 Sobic009G041700 Sobic005G177700--Sobic009G041700 Sobic001G253300 Sobic001G253300 Sobic005G177700--Sobic001G253300 Sobic004G228800 Sobic004G228800 Sobic005G177700--Sobic004G228800 Sobic003G365100 Sobic003G365100 Sobic005G177700--Sobic003G365100 Sobic002G268800 Sobic002G268800 Sobic005G177700--Sobic002G268800 Sobic003G316200--Sobic001G253300 Sobic003G316200--Sobic005G177700 Sobic003G316200--Sobic003G365100 Sobic001G188400 Sobic001G188400 Sobic003G316200--Sobic001G188400 Sobic006G250800 Sobic006G250800 Sobic003G316200--Sobic006G250800 Sobic004G078700 Sobic004G078700 Sobic003G316200--Sobic004G078700 Sobic002G079000 Sobic002G079000 Sobic003G316200--Sobic002G079000 Sobic003G316200--Sobic002G355800 Sobic003G114400 Sobic003G114400 Sobic003G316200--Sobic003G114400 Sobic007G056100--Sobic005G177700 Sobic010G243400 Sobic010G243400 Sobic007G056100--Sobic010G243400 Sobic007G056100--Sobic002G355800 Sobic009G224000 Sobic009G224000 Sobic007G056100--Sobic009G224000 Sobic003G199500 Sobic003G199500 Sobic007G056100--Sobic003G199500 Sobic001G421400 Sobic001G421400 Sobic007G056100--Sobic001G421400 Sobic010G261600 Sobic010G261600 Sobic007G056100--Sobic010G261600 Sobic002G303600 Sobic002G303600 Sobic007G056100--Sobic002G303600 Sobic001G465400 Sobic001G465400 Sobic007G056100--Sobic001G465400 Sobic010G169900 Sobic010G169900 Sobic002G355800--Sobic010G169900 Sobic007G172700 Sobic007G172700 Sobic002G355800--Sobic007G172700 Sobic006G128100 Sobic006G128100 Sobic002G355800--Sobic006G128100 Sobic010G213500 Sobic010G213500 Sobic002G355800--Sobic010G213500 Sobic001G389200 Sobic001G389200 Sobic002G355800--Sobic001G389200 Sobic001G475300 Sobic001G475300 Sobic002G355800--Sobic001G475300 Sobic003G058500 Sobic003G058500 Sobic002G355800--Sobic003G058500 Sobic009G162100 Sobic009G162100 Sobic002G355800--Sobic009G162100 Sobic002G355800--Sobic005G177700 Sobic006G260500 Sobic006G260500 Sobic006G077300--Sobic006G260500 Sobic006G021700 Sobic006G021700 Sobic006G077300--Sobic006G021700 Sobic003G209200 Sobic003G209200 Sobic006G077300--Sobic003G209200 Sobic001G056800 Sobic001G056800 Sobic006G077300--Sobic001G056800 Sobic002G401500 Sobic002G401500 Sobic006G077300--Sobic002G401500 Sobic006G077300--Sobic003G114400 Sobic007G005500 Sobic007G005500 Sobic006G077300--Sobic007G005500 Sobic005G062200 Sobic005G062200 Sobic006G077300--Sobic005G062200 Sobic002G042600 Sobic002G042600 Sobic006G077300--Sobic002G042600 Sobic001G114000 Sobic001G114000 Sobic009G041700--Sobic001G114000 Sobic004G321100 Sobic004G321100 Sobic009G041700--Sobic004G321100 Sobic009G041700--Sobic005G177700 Sobic005G138300 Sobic005G138300 Sobic009G041700--Sobic005G138300 Sobic007G218000 Sobic007G218000 Sobic009G041700--Sobic007G218000 Sobic009G041700--Sobic010G243400 Sobic006G167600 Sobic006G167600 Sobic009G041700--Sobic006G167600 Sobic004G067700 Sobic004G067700 Sobic009G041700--Sobic004G067700 Sobic009G124700 Sobic009G124700 Sobic009G041700--Sobic009G124700 Sobic001G253300--Sobic003G316200 Sobic001G253300--Sobic001G188400 Sobic001G253300--Sobic007G172700 Sobic008G097900 Sobic008G097900 Sobic001G253300--Sobic008G097900 Sobic001G253300--Sobic003G365100 Sobic001G253300--Sobic005G177700 Sobic001G253300--Sobic002G355800 Sobic001G253300--Sobic006G250800 Sobic001G253300--Sobic009G162100 Sobic004G261600 Sobic004G261600 Sobic004G228800--Sobic004G261600 Sobic004G228800--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic004G228800--Sobic004G323700 Sobic010G278200 Sobic010G278200 Sobic004G228800--Sobic010G278200 Sobic004G236200 Sobic004G236200 Sobic004G228800--Sobic004G236200 Sobic006G131000 Sobic006G131000 Sobic004G228800--Sobic006G131000 Sobic004G228800--Sobic005G177700 Sobic007G056600 Sobic007G056600 Sobic004G228800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic004G228800--Sobic003G126300 Sobic003G365100--Sobic003G316200 Sobic002G306100 Sobic002G306100 Sobic003G365100--Sobic002G306100 Sobic003G365100--Sobic001G253300 Sobic003G365100--Sobic005G177700 Sobic003G156400 Sobic003G156400 Sobic003G365100--Sobic003G156400 Sobic007G182000 Sobic007G182000 Sobic003G365100--Sobic007G182000 Sobic003G365100--Sobic006G250800 Sobic003G365100--Sobic001G188400 Sobic005G090300 Sobic005G090300 Sobic003G365100--Sobic005G090300 Sobic002G268800--Sobic005G177700 Sobic006G180000 Sobic006G180000 Sobic002G268800--Sobic006G180000 Sobic002G268800--Sobic003G316200 Sobic003G264100 Sobic003G264100 Sobic002G268800--Sobic003G264100 Sobic004G241900 Sobic004G241900 Sobic002G268800--Sobic004G241900 Sobic002G268800--Sobic007G056100 Sobic003G312200 Sobic003G312200 Sobic002G268800--Sobic003G312200 Sobic002G238400 Sobic002G238400 Sobic002G268800--Sobic002G238400 Sobic009G068500 Sobic009G068500 Sobic002G268800--Sobic009G068500
Octagon: transcription factors


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