Gene annotation
Transcriptome id Sobic.007G056100.2,Sobic.007G056100.4
Synonym Sb07g004520
Functional annotation expressed protein
UniProt A0A1B6PG19
Pfam PF06881
Panther DB PTHR15141 PTHR15141:SF53
NCBI CDD -
KEGG Orthology K15077; elongin-A
Gene Ontology GO:0016021; integral component of membrane GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G42780 : -
RAP-DB (Rice) LOC_Os08g07280.1 : expressed protein
MaizeGDB (Corn) Zm00025a055032
Brachypodium KQJ95225 , KQJ95226
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G177700 transmembrane protein 49, putative, expressed -
2 Sobic.010G243400 expressed protein -
3 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
4 Sobic.009G224000 OsQSOXL1 quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed K10758: thiol oxidase
5 Sobic.003G199500 integral membrane protein, putative, expressed -
6 Sobic.001G421400 expressed protein -
7 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
8 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
9 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
10 Sobic.001G049400 OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
11 Sobic.001G313500 tobamovirus multiplication protein, putative, expressed -
12 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
13 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
14 Sobic.002G431000 transporter, putative, expressed -
15 Sobic.010G184300 glycosyltransferase family protein, putative, expressed K00771: protein xylosyltransferase
16 Sobic.003G058500 expressed protein -
17 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
18 Sobic.008G165000 LSD1 zinc finger domain containing protein, expressed -
19 Sobic.002G268800 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
20 Sobic.003G365100 hydrolase, alpha/beta fold family, putative, expressed -


Gene co-expression network
sample Sobic007G056100 Sobic007G056100 Sobic005G177700 Sobic005G177700 Sobic007G056100--Sobic005G177700 Sobic010G243400 Sobic010G243400 Sobic007G056100--Sobic010G243400 Sobic002G355800 Sobic002G355800 Sobic007G056100--Sobic002G355800 Sobic009G224000 Sobic009G224000 Sobic007G056100--Sobic009G224000 Sobic003G199500 Sobic003G199500 Sobic007G056100--Sobic003G199500 Sobic001G421400 Sobic001G421400 Sobic007G056100--Sobic001G421400 Sobic010G261600 Sobic010G261600 Sobic007G056100--Sobic010G261600 Sobic002G303600 Sobic002G303600 Sobic007G056100--Sobic002G303600 Sobic001G465400 Sobic001G465400 Sobic007G056100--Sobic001G465400 Sobic003G316200 Sobic003G316200 Sobic005G177700--Sobic003G316200 Sobic005G177700--Sobic007G056100 Sobic005G177700--Sobic002G355800 Sobic006G077300 Sobic006G077300 Sobic005G177700--Sobic006G077300 Sobic009G041700 Sobic009G041700 Sobic005G177700--Sobic009G041700 Sobic001G253300 Sobic001G253300 Sobic005G177700--Sobic001G253300 Sobic004G228800 Sobic004G228800 Sobic005G177700--Sobic004G228800 Sobic003G365100 Sobic003G365100 Sobic005G177700--Sobic003G365100 Sobic002G268800 Sobic002G268800 Sobic005G177700--Sobic002G268800 Sobic008G165000 Sobic008G165000 Sobic010G243400--Sobic008G165000 Sobic010G243400--Sobic007G056100 Sobic010G243400--Sobic010G261600 Sobic003G243700 Sobic003G243700 Sobic010G243400--Sobic003G243700 Sobic010G243400--Sobic009G041700 Sobic010G243400--Sobic009G224000 Sobic004G003401 Sobic004G003401 Sobic010G243400--Sobic004G003401 Sobic008G173400 Sobic008G173400 Sobic010G243400--Sobic008G173400 Sobic010G243400--Sobic001G421400 Sobic010G169900 Sobic010G169900 Sobic002G355800--Sobic010G169900 Sobic007G172700 Sobic007G172700 Sobic002G355800--Sobic007G172700 Sobic006G128100 Sobic006G128100 Sobic002G355800--Sobic006G128100 Sobic010G213500 Sobic010G213500 Sobic002G355800--Sobic010G213500 Sobic001G389200 Sobic001G389200 Sobic002G355800--Sobic001G389200 Sobic001G475300 Sobic001G475300 Sobic002G355800--Sobic001G475300 Sobic003G058500 Sobic003G058500 Sobic002G355800--Sobic003G058500 Sobic009G162100 Sobic009G162100 Sobic002G355800--Sobic009G162100 Sobic002G355800--Sobic005G177700 Sobic003G338500 Sobic003G338500 Sobic009G224000--Sobic003G338500 Sobic009G224000--Sobic010G243400 Sobic009G224000--Sobic007G056100 Sobic002G361300 Sobic002G361300 Sobic009G224000--Sobic002G361300 Sobic004G130400 Sobic004G130400 Sobic009G224000--Sobic004G130400 Sobic009G224000--Sobic010G261600 Sobic003G394200 Sobic003G394200 Sobic009G224000--Sobic003G394200 Sobic003G270600 Sobic003G270600 Sobic009G224000--Sobic003G270600 Sobic009G224000--Sobic008G173400 Sobic003G199500--Sobic007G056100 Sobic004G296700 Sobic004G296700 Sobic003G199500--Sobic004G296700 Sobic001G313500 Sobic001G313500 Sobic003G199500--Sobic001G313500 Sobic003G199500--Sobic010G243400 Sobic009G160600 Sobic009G160600 Sobic003G199500--Sobic009G160600 Sobic003G199500--Sobic002G355800 Sobic008G140400 Sobic008G140400 Sobic003G199500--Sobic008G140400 Sobic003G199500--Sobic001G421400 Sobic001G378200 Sobic001G378200 Sobic003G199500--Sobic001G378200 Sobic001G421400--Sobic001G313500 Sobic001G421400--Sobic010G243400 Sobic003G382900 Sobic003G382900 Sobic001G421400--Sobic003G382900 Sobic001G161900 Sobic001G161900 Sobic001G421400--Sobic001G161900 Sobic003G200600 Sobic003G200600 Sobic001G421400--Sobic003G200600 Sobic001G421400--Sobic007G056100 Sobic001G512400 Sobic001G512400 Sobic001G421400--Sobic001G512400 Sobic003G148900 Sobic003G148900 Sobic001G421400--Sobic003G148900 Sobic001G421400--Sobic010G261600 Sobic010G261600--Sobic003G338500 Sobic010G261600--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic010G261600--Sobic002G008800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic002G303600--Sobic010G261600 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic006G180000 Sobic006G180000 Sobic002G303600--Sobic006G180000 Sobic007G218000 Sobic007G218000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic009G092400 Sobic009G092400 Sobic002G303600--Sobic009G092400 Sobic002G303600--Sobic004G003401 Sobic003G034900 Sobic003G034900 Sobic001G465400--Sobic003G034900 Sobic006G012700 Sobic006G012700 Sobic001G465400--Sobic006G012700 Sobic001G115700 Sobic001G115700 Sobic001G465400--Sobic001G115700 Sobic001G465400--Sobic001G378200 Sobic004G078700 Sobic004G078700 Sobic001G465400--Sobic004G078700 Sobic004G000100 Sobic004G000100 Sobic001G465400--Sobic004G000100 Sobic001G047600 Sobic001G047600 Sobic001G465400--Sobic001G047600 Sobic001G008100 Sobic001G008100 Sobic001G465400--Sobic001G008100 Sobic004G347600 Sobic004G347600 Sobic001G465400--Sobic004G347600
Octagon: transcription factors


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