Gene annotation
Transcriptome id Sobic.001G313500.1
Synonym Sb01g030490, TOM3
Functional annotation tobamovirus multiplication protein, putative, expressed
UniProt C5WTL9
Pfam PF06454
Panther DB PTHR31142 PTHR31142:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02180 : tobamovirus multiplication protein 3
RAP-DB (Rice) LOC_Os10g39220.1 : tobamovirus multiplication protein, putative, expressed
MaizeGDB (Corn) Zm00025a053507 , Zm00025a052261 , Zm00025a003169
Brachypodium KQJ97600
Barley HORVU1Hr1G051840.1 , HORVU1Hr1G051840.3 , HORVU1Hr1G051840.2 , HORVU1Hr1G051840.5 , HORVU1Hr1G051840.4
Wheat TraesCS1D02G204200 , TraesCS1A02G200800 , TraesCS1B02G215200
Populus -


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cDNA sequences
Sobic.001G313500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G421400 expressed protein -
2 Sobic.001G512400 expressed protein -
3 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
4 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
5 Sobic.001G161900 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
6 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
7 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
8 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
9 Sobic.004G039300 phosphatidate cytidylyltransferase family protein, putative, expressed K00902: dolichol kinase
10 Sobic.010G243400 expressed protein -
11 Sobic.001G511300 expressed protein -
12 Sobic.007G139700 DCN1, putative, expressed K17824: DCN1-like protein 4/5
13 Sobic.002G378300 ADP-ribosylation factor, putative, expressed K07952: ADP-ribosylation factor related protein 1
14 Sobic.007G056100 expressed protein K15077: elongin-A
15 Sobic.008G165000 LSD1 zinc finger domain containing protein, expressed -
16 Sobic.003G201900 coiled-coil domain-containing protein, putative, expressed -
17 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
18 Sobic.009G225000 transmembrane protein 93, putative, expressed -
19 Sobic.003G199500 integral membrane protein, putative, expressed -
20 Sobic.003G200600 CBS domain containing membrane protein, putative, expressed -


Gene co-expression network
sample Sobic001G313500 Sobic001G313500 Sobic001G421400 Sobic001G421400 Sobic001G313500--Sobic001G421400 Sobic001G512400 Sobic001G512400 Sobic001G313500--Sobic001G512400 Sobic001G085900 Sobic001G085900 Sobic001G313500--Sobic001G085900 Sobic002G385900 Sobic002G385900 Sobic001G313500--Sobic002G385900 Sobic001G161900 Sobic001G161900 Sobic001G313500--Sobic001G161900 Sobic010G129600 Sobic010G129600 Sobic001G313500--Sobic010G129600 Sobic009G135600 Sobic009G135600 Sobic001G313500--Sobic009G135600 Sobic010G261600 Sobic010G261600 Sobic001G313500--Sobic010G261600 Sobic004G039300 Sobic004G039300 Sobic001G313500--Sobic004G039300 Sobic001G421400--Sobic001G313500 Sobic010G243400 Sobic010G243400 Sobic001G421400--Sobic010G243400 Sobic003G382900 Sobic003G382900 Sobic001G421400--Sobic003G382900 Sobic001G421400--Sobic001G161900 Sobic003G200600 Sobic003G200600 Sobic001G421400--Sobic003G200600 Sobic007G056100 Sobic007G056100 Sobic001G421400--Sobic007G056100 Sobic001G421400--Sobic001G512400 Sobic003G148900 Sobic003G148900 Sobic001G421400--Sobic003G148900 Sobic001G421400--Sobic010G261600 Sobic001G512400--Sobic001G313500 Sobic001G512400--Sobic009G135600 Sobic002G040700 Sobic002G040700 Sobic001G512400--Sobic002G040700 Sobic006G263900 Sobic006G263900 Sobic001G512400--Sobic006G263900 Sobic001G512400--Sobic001G421400 Sobic008G165000 Sobic008G165000 Sobic001G512400--Sobic008G165000 Sobic001G512400--Sobic001G161900 Sobic003G349300 Sobic003G349300 Sobic001G512400--Sobic003G349300 Sobic010G188200 Sobic010G188200 Sobic001G512400--Sobic010G188200 Sobic001G085900--Sobic004G039300 Sobic001G085900--Sobic001G313500 Sobic001G158500 Sobic001G158500 Sobic001G085900--Sobic001G158500 Sobic002G083266 Sobic002G083266 Sobic001G085900--Sobic002G083266 Sobic001G085900--Sobic002G385900 Sobic001G085900--Sobic010G129600 Sobic001G298300 Sobic001G298300 Sobic001G085900--Sobic001G298300 Sobic007G006700 Sobic007G006700 Sobic001G085900--Sobic007G006700 Sobic003G061900 Sobic003G061900 Sobic001G085900--Sobic003G061900 Sobic002G385900--Sobic009G135600 Sobic001G057800 Sobic001G057800 Sobic002G385900--Sobic001G057800 Sobic001G461900 Sobic001G461900 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G166900 Sobic002G166900 Sobic002G385900--Sobic002G166900 Sobic010G042100 Sobic010G042100 Sobic002G385900--Sobic010G042100 Sobic001G323000 Sobic001G323000 Sobic002G385900--Sobic001G323000 Sobic009G207000 Sobic009G207000 Sobic002G385900--Sobic009G207000 Sobic006G281800 Sobic006G281800 Sobic002G385900--Sobic006G281800 Sobic009G160600 Sobic009G160600 Sobic001G161900--Sobic009G160600 Sobic001G161900--Sobic010G129600 Sobic001G161900--Sobic001G421400 Sobic001G005600 Sobic001G005600 Sobic001G161900--Sobic001G005600 Sobic001G161900--Sobic010G261600 Sobic001G161900--Sobic001G313500 Sobic003G053800 Sobic003G053800 Sobic001G161900--Sobic003G053800 Sobic001G161900--Sobic010G243400 Sobic001G161900--Sobic001G512400 Sobic010G129600--Sobic001G005600 Sobic010G129600--Sobic001G161900 Sobic010G129600--Sobic001G313500 Sobic006G271200 Sobic006G271200 Sobic010G129600--Sobic006G271200 Sobic004G091200 Sobic004G091200 Sobic010G129600--Sobic004G091200 Sobic010G129600--Sobic010G261600 Sobic010G129600--Sobic009G160600 Sobic006G237900 Sobic006G237900 Sobic010G129600--Sobic006G237900 Sobic008G061100 Sobic008G061100 Sobic010G129600--Sobic008G061100 Sobic009G135600--Sobic001G461900 Sobic009G135600--Sobic003G349300 Sobic009G146100 Sobic009G146100 Sobic009G135600--Sobic009G146100 Sobic001G433400 Sobic001G433400 Sobic009G135600--Sobic001G433400 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic002G400000 Sobic002G400000 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic001G054200 Sobic001G054200 Sobic009G135600--Sobic001G054200 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic002G303600 Sobic002G303600 Sobic010G261600--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic010G261600--Sobic002G008800 Sobic004G228800 Sobic004G228800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic004G039300--Sobic001G085900 Sobic004G039300--Sobic001G313500 Sobic007G117800 Sobic007G117800 Sobic004G039300--Sobic007G117800 Sobic010G026700 Sobic010G026700 Sobic004G039300--Sobic010G026700 Sobic003G033000 Sobic003G033000 Sobic004G039300--Sobic003G033000 Sobic003G121600 Sobic003G121600 Sobic004G039300--Sobic003G121600 Sobic001G122500 Sobic001G122500 Sobic004G039300--Sobic001G122500 Sobic001G311100 Sobic001G311100 Sobic004G039300--Sobic001G311100 Sobic002G261900 Sobic002G261900 Sobic004G039300--Sobic002G261900
Octagon: transcription factors


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