Gene annotation
Transcriptome id Sobic.003G201900.1
Synonym
Functional annotation coiled-coil domain-containing protein, putative, expressed
UniProt C5XPH3
Pfam PF04502
Panther DB PTHR12111 PTHR12111:SF1
NCBI CDD KOG2989; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17130 : Family of unknown function (DUF572)
RAP-DB (Rice) LOC_Os01g40610.1 : coiled-coil domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a038422
Brachypodium KQK08485
Barley HORVU3Hr1G111800.1 , HORVU3Hr1G111800.2 , HORVU2Hr1G076710.5 , HORVU2Hr1G076710.4 , HORVU2Hr1G076710.7 , HORVU2Hr1G076710.6 , HORVU2Hr1G076710.1 , HORVU2Hr1G076710.3 , HORVU2Hr1G076710.2
Wheat TraesCS2B02G324800 , TraesCS2B02G324800 , TraesCS2D02G306600 , TraesCS2A02G308300 , TraesCS3B02G241400 , TraesCS2D02G362000 , TraesCS3A02G210800 , TraesCS3D02G213700
Populus -


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cDNA sequences
Sobic.003G201900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G225300 expressed protein -
2 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
3 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
5 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
6 Sobic.007G139700 DCN1, putative, expressed K17824: DCN1-like protein 4/5
7 Sobic.001G313500 tobamovirus multiplication protein, putative, expressed -
8 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
9 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
10 Sobic.001G161900 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
11 Sobic.004G091200 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
12 Sobic.003G099100 ZOS9-05 - C2H2 zinc finger protein, expressed -
13 Sobic.002G378300 ADP-ribosylation factor, putative, expressed K07952: ADP-ribosylation factor related protein 1
14 Sobic.010G027600 transcription factor TFIIF, putative, expressed K11341: YEATS4, GAS41, YEATS domain-containing protein 4
15 Sobic.009G228700 expressed protein -
16 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
17 Sobic.001G421400 expressed protein -
18 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
19 Sobic.007G166100 no apical meristem protein, putative, expressed -
20 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3


Gene co-expression network
sample Sobic003G201900 Sobic003G201900 Sobic006G225300 Sobic006G225300 Sobic003G201900--Sobic006G225300 Sobic002G385900 Sobic002G385900 Sobic003G201900--Sobic002G385900 Sobic002G256300 Sobic002G256300 Sobic003G201900--Sobic002G256300 Sobic003G416400 Sobic003G416400 Sobic003G201900--Sobic003G416400 Sobic003G312200 Sobic003G312200 Sobic003G201900--Sobic003G312200 Sobic007G139700 Sobic007G139700 Sobic003G201900--Sobic007G139700 Sobic001G313500 Sobic001G313500 Sobic003G201900--Sobic001G313500 Sobic009G135600 Sobic009G135600 Sobic003G201900--Sobic009G135600 Sobic001G114500 Sobic001G114500 Sobic003G201900--Sobic001G114500 Sobic001G294900 Sobic001G294900 Sobic006G225300--Sobic001G294900 Sobic006G225300--Sobic003G201900 Sobic010G193800 Sobic010G193800 Sobic006G225300--Sobic010G193800 Sobic009G083200 Sobic009G083200 Sobic006G225300--Sobic009G083200 Sobic001G439600 Sobic001G439600 Sobic006G225300--Sobic001G439600 Sobic006G225300--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic006G225300--Sobic001G532100 Sobic004G104900 Sobic004G104900 Sobic006G225300--Sobic004G104900 Sobic006G225300--Sobic009G135600 Sobic002G385900--Sobic009G135600 Sobic001G057800 Sobic001G057800 Sobic002G385900--Sobic001G057800 Sobic001G461900 Sobic001G461900 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G166900 Sobic002G166900 Sobic002G385900--Sobic002G166900 Sobic010G042100 Sobic010G042100 Sobic002G385900--Sobic010G042100 Sobic001G323000 Sobic001G323000 Sobic002G385900--Sobic001G323000 Sobic009G207000 Sobic009G207000 Sobic002G385900--Sobic009G207000 Sobic006G281800 Sobic006G281800 Sobic002G385900--Sobic006G281800 Sobic009G246950 Sobic009G246950 Sobic002G256300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic002G256300--Sobic010G083700 Sobic002G256300--Sobic004G104900 Sobic010G168600 Sobic010G168600 Sobic002G256300--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G256300--Sobic001G136900 Sobic002G256300--Sobic010G193800 Sobic002G256300--Sobic001G439600 Sobic006G263900 Sobic006G263900 Sobic002G256300--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic002G256300--Sobic009G171700 Sobic001G395400 Sobic001G395400 Sobic003G416400--Sobic001G395400 Sobic002G105200 Sobic002G105200 Sobic003G416400--Sobic002G105200 Sobic002G375300 Sobic002G375300 Sobic003G416400--Sobic002G375300 Sobic003G416400--Sobic001G057800 Sobic003G077900 Sobic003G077900 Sobic003G416400--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic003G416400--Sobic002G400000 Sobic003G416400--Sobic003G201900 Sobic003G416400--Sobic002G385900 Sobic003G416400--Sobic001G323000 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic001G091300 Sobic001G091300 Sobic003G312200--Sobic001G091300 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic009G228700 Sobic009G228700 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic001G085100 Sobic001G085100 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic003G349300 Sobic003G349300 Sobic007G139700--Sobic003G349300 Sobic010G188100 Sobic010G188100 Sobic007G139700--Sobic010G188100 Sobic007G139700--Sobic002G385900 Sobic010G026700 Sobic010G026700 Sobic007G139700--Sobic010G026700 Sobic007G139700--Sobic001G313500 Sobic007G139700--Sobic003G201900 Sobic007G139700--Sobic006G281800 Sobic001G328200 Sobic001G328200 Sobic007G139700--Sobic001G328200 Sobic007G139700--Sobic002G166900 Sobic001G421400 Sobic001G421400 Sobic001G313500--Sobic001G421400 Sobic001G512400 Sobic001G512400 Sobic001G313500--Sobic001G512400 Sobic001G085900 Sobic001G085900 Sobic001G313500--Sobic001G085900 Sobic001G313500--Sobic002G385900 Sobic001G161900 Sobic001G161900 Sobic001G313500--Sobic001G161900 Sobic010G129600 Sobic010G129600 Sobic001G313500--Sobic010G129600 Sobic001G313500--Sobic009G135600 Sobic010G261600 Sobic010G261600 Sobic001G313500--Sobic010G261600 Sobic004G039300 Sobic004G039300 Sobic001G313500--Sobic004G039300 Sobic009G135600--Sobic001G461900 Sobic009G135600--Sobic003G349300 Sobic009G146100 Sobic009G146100 Sobic009G135600--Sobic009G146100 Sobic001G433400 Sobic001G433400 Sobic009G135600--Sobic001G433400 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic009G135600--Sobic002G400000 Sobic009G135600--Sobic001G294900 Sobic001G054200 Sobic001G054200 Sobic009G135600--Sobic001G054200 Sobic003G132000 Sobic003G132000 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic009G164000 Sobic009G164000 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800
Octagon: transcription factors


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