Gene annotation
Transcriptome id Sobic.003G416400.1
Synonym Sb03g044990, AtATG18a
Functional annotation WD40-like domain containing protein, putative, expressed
UniProt C5XH35
Pfam -
Panther DB PTHR11227 PTHR11227:SF18
NCBI CDD KOG2111; Uncharacterized conserved protein, contains WD40 repeats
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62770 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g70780.1 : WD40-like domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026145 , Zm00025a039201
Brachypodium KQK11384
Barley HORVU3Hr1G098020.2 , HORVU3Hr1G098020.3 , HORVU3Hr1G098020.1 , HORVU3Hr1G098020.4
Wheat TraesCS3B02G490900 , TraesCS3A02G453200
Populus PNS23811


JBrowse

Open New Page


cDNA sequences
Sobic.003G416400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
2 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
3 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
4 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
5 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
6 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.003G201900 coiled-coil domain-containing protein, putative, expressed -
8 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
9 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
10 Sobic.003G436300 expressed protein -
11 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
12 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
14 Sobic.007G166100 no apical meristem protein, putative, expressed -
15 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
16 Sobic.001G296900 dual specificity protein phosphatase, putative, expressed -
17 Sobic.003G053800 WD40-like domain containing protein, putative, expressed -
18 Sobic.004G348900 expressed protein -
19 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
20 Sobic.003G299000 protein of unknown function DUF1421 domain containing protein, expressed -


Gene co-expression network
sample Sobic003G416400 Sobic003G416400 Sobic001G395400 Sobic001G395400 Sobic003G416400--Sobic001G395400 Sobic002G105200 Sobic002G105200 Sobic003G416400--Sobic002G105200 Sobic002G375300 Sobic002G375300 Sobic003G416400--Sobic002G375300 Sobic001G057800 Sobic001G057800 Sobic003G416400--Sobic001G057800 Sobic003G077900 Sobic003G077900 Sobic003G416400--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic003G416400--Sobic002G400000 Sobic003G201900 Sobic003G201900 Sobic003G416400--Sobic003G201900 Sobic002G385900 Sobic002G385900 Sobic003G416400--Sobic002G385900 Sobic001G323000 Sobic001G323000 Sobic003G416400--Sobic001G323000 Sobic007G166100 Sobic007G166100 Sobic001G395400--Sobic007G166100 Sobic001G395400--Sobic002G400000 Sobic006G263900 Sobic006G263900 Sobic001G395400--Sobic006G263900 Sobic001G395400--Sobic003G416400 Sobic010G168600 Sobic010G168600 Sobic001G395400--Sobic010G168600 Sobic001G395400--Sobic003G077900 Sobic010G000900 Sobic010G000900 Sobic001G395400--Sobic010G000900 Sobic001G395400--Sobic001G057800 Sobic009G165800 Sobic009G165800 Sobic001G395400--Sobic009G165800 Sobic002G382600 Sobic002G382600 Sobic002G105200--Sobic002G382600 Sobic002G105200--Sobic003G416400 Sobic004G237400 Sobic004G237400 Sobic002G105200--Sobic004G237400 Sobic003G053800 Sobic003G053800 Sobic002G105200--Sobic003G053800 Sobic010G020300 Sobic010G020300 Sobic002G105200--Sobic010G020300 Sobic003G352200 Sobic003G352200 Sobic002G105200--Sobic003G352200 Sobic001G296900 Sobic001G296900 Sobic002G105200--Sobic001G296900 Sobic001G473600 Sobic001G473600 Sobic002G105200--Sobic001G473600 Sobic004G091200 Sobic004G091200 Sobic002G105200--Sobic004G091200 Sobic001G158500 Sobic001G158500 Sobic002G375300--Sobic001G158500 Sobic002G375300--Sobic001G395400 Sobic002G375300--Sobic010G000900 Sobic002G375300--Sobic003G416400 Sobic007G068900 Sobic007G068900 Sobic002G375300--Sobic007G068900 Sobic003G098000 Sobic003G098000 Sobic002G375300--Sobic003G098000 Sobic006G092400 Sobic006G092400 Sobic002G375300--Sobic006G092400 Sobic002G352600 Sobic002G352600 Sobic002G375300--Sobic002G352600 Sobic004G102400 Sobic004G102400 Sobic002G375300--Sobic004G102400 Sobic001G057800--Sobic001G323000 Sobic001G057800--Sobic002G400000 Sobic002G352700 Sobic002G352700 Sobic001G057800--Sobic002G352700 Sobic001G057800--Sobic002G385900 Sobic001G057800--Sobic001G158500 Sobic004G130900 Sobic004G130900 Sobic001G057800--Sobic004G130900 Sobic001G057800--Sobic010G000900 Sobic001G057800--Sobic010G168600 Sobic009G207000 Sobic009G207000 Sobic001G057800--Sobic009G207000 Sobic003G077900--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic010G188100 Sobic010G188100 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic003G077900--Sobic004G130900 Sobic002G400000--Sobic007G168600 Sobic002G400000--Sobic003G077900 Sobic009G198500 Sobic009G198500 Sobic002G400000--Sobic009G198500 Sobic002G400000--Sobic004G130900 Sobic001G433400 Sobic001G433400 Sobic002G400000--Sobic001G433400 Sobic002G400000--Sobic001G395400 Sobic004G327300 Sobic004G327300 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic002G400000--Sobic010G000900 Sobic006G225300 Sobic006G225300 Sobic003G201900--Sobic006G225300 Sobic003G201900--Sobic002G385900 Sobic002G256300 Sobic002G256300 Sobic003G201900--Sobic002G256300 Sobic003G201900--Sobic003G416400 Sobic003G312200 Sobic003G312200 Sobic003G201900--Sobic003G312200 Sobic007G139700 Sobic007G139700 Sobic003G201900--Sobic007G139700 Sobic001G313500 Sobic001G313500 Sobic003G201900--Sobic001G313500 Sobic009G135600 Sobic009G135600 Sobic003G201900--Sobic009G135600 Sobic001G114500 Sobic001G114500 Sobic003G201900--Sobic001G114500 Sobic002G385900--Sobic009G135600 Sobic002G385900--Sobic001G057800 Sobic001G461900 Sobic001G461900 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G166900 Sobic002G166900 Sobic002G385900--Sobic002G166900 Sobic010G042100 Sobic010G042100 Sobic002G385900--Sobic010G042100 Sobic002G385900--Sobic001G323000 Sobic002G385900--Sobic009G207000 Sobic006G281800 Sobic006G281800 Sobic002G385900--Sobic006G281800 Sobic001G206900 Sobic001G206900 Sobic001G323000--Sobic001G206900 Sobic006G034000 Sobic006G034000 Sobic001G323000--Sobic006G034000 Sobic009G228700 Sobic009G228700 Sobic001G323000--Sobic009G228700 Sobic001G323000--Sobic001G057800 Sobic001G323000--Sobic003G312200 Sobic006G148200 Sobic006G148200 Sobic001G323000--Sobic006G148200 Sobic001G323000--Sobic009G207000 Sobic001G323000--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic001G323000--Sobic001G085100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.