Gene annotation
Transcriptome id Sobic.003G053800.2,Sobic.003G053800.3,Sobic.003G053800.1
Synonym Sb03g004650, ATG18D, ATATG18D
Functional annotation WD40-like domain containing protein, putative, expressed
UniProt A0A1W0VVT7 , C5XNH5
Pfam -
Panther DB PTHR11227 PTHR11227:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G56440 : homolog of yeast autophagy 18 (ATG18) D
RAP-DB (Rice) LOC_Os01g07400.1 : WD40-like domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a023293 , Zm00025a035703
Brachypodium -
Barley HORVU3Hr1G017150.3 , HORVU3Hr1G017150.2 , HORVU3Hr1G017150.1 , HORVU3Hr1G017140.1
Wheat TraesCS3A02G095300 , TraesCS3D02G095500 , TraesCS3B02G110900
Populus -


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cDNA sequences
Sobic.003G053800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G296900 dual specificity protein phosphatase, putative, expressed -
2 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
3 Sobic.010G020300 spastin, putative, expressed K13254: spastin
4 Sobic.001G085100 expressed protein -
5 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
6 Sobic.001G161900 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
7 Sobic.010G164000 FYVE zinc finger domain containing protein, expressed -
8 Sobic.008G076800 expressed protein -
9 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
10 Sobic.004G323700 zinc finger family protein, putative, expressed -
11 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.004G003401 - -
13 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
14 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
15 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
16 Sobic.007G166100 no apical meristem protein, putative, expressed -
17 Sobic.002G117400 expressed protein -
18 Sobic.009G228700 expressed protein -
19 Sobic.003G436300 expressed protein -
20 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -


Gene co-expression network
sample Sobic003G053800 Sobic003G053800 Sobic001G296900 Sobic001G296900 Sobic003G053800--Sobic001G296900 Sobic002G105200 Sobic002G105200 Sobic003G053800--Sobic002G105200 Sobic010G020300 Sobic010G020300 Sobic003G053800--Sobic010G020300 Sobic001G085100 Sobic001G085100 Sobic003G053800--Sobic001G085100 Sobic001G124200 Sobic001G124200 Sobic003G053800--Sobic001G124200 Sobic001G161900 Sobic001G161900 Sobic003G053800--Sobic001G161900 Sobic010G164000 Sobic010G164000 Sobic003G053800--Sobic010G164000 Sobic008G076800 Sobic008G076800 Sobic003G053800--Sobic008G076800 Sobic002G303600 Sobic002G303600 Sobic003G053800--Sobic002G303600 Sobic001G296900--Sobic003G053800 Sobic009G243100 Sobic009G243100 Sobic001G296900--Sobic009G243100 Sobic001G296900--Sobic010G020300 Sobic005G160400 Sobic005G160400 Sobic001G296900--Sobic005G160400 Sobic001G296900--Sobic002G105200 Sobic003G422900 Sobic003G422900 Sobic001G296900--Sobic003G422900 Sobic001G395400 Sobic001G395400 Sobic001G296900--Sobic001G395400 Sobic007G166100 Sobic007G166100 Sobic001G296900--Sobic007G166100 Sobic003G436300 Sobic003G436300 Sobic001G296900--Sobic003G436300 Sobic002G382600 Sobic002G382600 Sobic002G105200--Sobic002G382600 Sobic003G416400 Sobic003G416400 Sobic002G105200--Sobic003G416400 Sobic004G237400 Sobic004G237400 Sobic002G105200--Sobic004G237400 Sobic002G105200--Sobic003G053800 Sobic002G105200--Sobic010G020300 Sobic003G352200 Sobic003G352200 Sobic002G105200--Sobic003G352200 Sobic002G105200--Sobic001G296900 Sobic001G473600 Sobic001G473600 Sobic002G105200--Sobic001G473600 Sobic004G091200 Sobic004G091200 Sobic002G105200--Sobic004G091200 Sobic010G020300--Sobic001G124200 Sobic010G205800 Sobic010G205800 Sobic010G020300--Sobic010G205800 Sobic004G065000 Sobic004G065000 Sobic010G020300--Sobic004G065000 Sobic001G390800 Sobic001G390800 Sobic010G020300--Sobic001G390800 Sobic010G020300--Sobic003G352200 Sobic004G177300 Sobic004G177300 Sobic010G020300--Sobic004G177300 Sobic010G278200 Sobic010G278200 Sobic010G020300--Sobic010G278200 Sobic001G227400 Sobic001G227400 Sobic010G020300--Sobic001G227400 Sobic001G121200 Sobic001G121200 Sobic010G020300--Sobic001G121200 Sobic006G101700 Sobic006G101700 Sobic001G085100--Sobic006G101700 Sobic001G261436 Sobic001G261436 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G085100--Sobic007G167900 Sobic001G206900 Sobic001G206900 Sobic001G085100--Sobic001G206900 Sobic001G047400 Sobic001G047400 Sobic001G085100--Sobic001G047400 Sobic004G066200 Sobic004G066200 Sobic001G085100--Sobic004G066200 Sobic001G091300 Sobic001G091300 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200 Sobic001G124200--Sobic010G205800 Sobic001G124200--Sobic010G020300 Sobic003G155900 Sobic003G155900 Sobic001G124200--Sobic003G155900 Sobic004G039600 Sobic004G039600 Sobic001G124200--Sobic004G039600 Sobic001G124200--Sobic010G278200 Sobic007G132100 Sobic007G132100 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700 Sobic009G160600 Sobic009G160600 Sobic001G161900--Sobic009G160600 Sobic010G129600 Sobic010G129600 Sobic001G161900--Sobic010G129600 Sobic001G421400 Sobic001G421400 Sobic001G161900--Sobic001G421400 Sobic001G005600 Sobic001G005600 Sobic001G161900--Sobic001G005600 Sobic010G261600 Sobic010G261600 Sobic001G161900--Sobic010G261600 Sobic001G313500 Sobic001G313500 Sobic001G161900--Sobic001G313500 Sobic001G161900--Sobic003G053800 Sobic010G243400 Sobic010G243400 Sobic001G161900--Sobic010G243400 Sobic001G512400 Sobic001G512400 Sobic001G161900--Sobic001G512400 Sobic002G262900 Sobic002G262900 Sobic010G164000--Sobic002G262900 Sobic010G164000--Sobic001G085100 Sobic010G000900 Sobic010G000900 Sobic010G164000--Sobic010G000900 Sobic004G275700 Sobic004G275700 Sobic010G164000--Sobic004G275700 Sobic010G164000--Sobic004G066200 Sobic010G164000--Sobic001G121200 Sobic010G164000--Sobic001G091300 Sobic010G164000--Sobic009G228700 Sobic010G164000--Sobic010G261600 Sobic007G078500 Sobic007G078500 Sobic008G076800--Sobic007G078500 Sobic002G347000 Sobic002G347000 Sobic008G076800--Sobic002G347000 Sobic010G265300 Sobic010G265300 Sobic008G076800--Sobic010G265300 Sobic001G207000 Sobic001G207000 Sobic008G076800--Sobic001G207000 Sobic008G076800--Sobic003G053800 Sobic008G076800--Sobic001G121200 Sobic010G251000 Sobic010G251000 Sobic008G076800--Sobic010G251000 Sobic008G076800--Sobic001G085100 Sobic001G281600 Sobic001G281600 Sobic008G076800--Sobic001G281600 Sobic002G303600--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic006G180000 Sobic006G180000 Sobic002G303600--Sobic006G180000 Sobic007G218000 Sobic007G218000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic002G303600--Sobic003G422900 Sobic009G092400 Sobic009G092400 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401
Octagon: transcription factors


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