Gene annotation
Transcriptome id Sobic.001G296900.1
Synonym Sb01g028980
Functional annotation dual specificity protein phosphatase, putative, expressed
UniProt C5WRJ1
Pfam PF00782
Panther DB PTHR10159 PTHR10159:SF369
NCBI CDD KOG1719; Dual specificity phosphatase
KEGG Orthology -
Gene Ontology GO:0008138; protein tyrosine/serine/threonine phosphatase activity GO:0006470protein dephosphorylation


Orthologs (automatic annotation)
TAIR AT2G35680 : Phosphotyrosine protein phosphatases superfamily protein
RAP-DB (Rice) LOC_Os10g41240.1 : dual specificity protein phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a051954
Brachypodium KQJ97810
Barley -
Wheat TraesCS1B02G232400 , TraesCS1A02G218900 , TraesCS1D02G220600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G296900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G053800 WD40-like domain containing protein, putative, expressed -
2 Sobic.009G243100 pex14, putative, expressed -
3 Sobic.010G020300 spastin, putative, expressed K13254: spastin
4 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
5 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
6 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
7 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
8 Sobic.007G166100 no apical meristem protein, putative, expressed -
9 Sobic.003G436300 expressed protein -
10 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
12 Sobic.001G085100 expressed protein -
13 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
14 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
16 Sobic.008G076800 expressed protein -
17 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
18 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
19 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
20 Sobic.002G117400 expressed protein -


Gene co-expression network
sample Sobic001G296900 Sobic001G296900 Sobic003G053800 Sobic003G053800 Sobic001G296900--Sobic003G053800 Sobic009G243100 Sobic009G243100 Sobic001G296900--Sobic009G243100 Sobic010G020300 Sobic010G020300 Sobic001G296900--Sobic010G020300 Sobic005G160400 Sobic005G160400 Sobic001G296900--Sobic005G160400 Sobic002G105200 Sobic002G105200 Sobic001G296900--Sobic002G105200 Sobic003G422900 Sobic003G422900 Sobic001G296900--Sobic003G422900 Sobic001G395400 Sobic001G395400 Sobic001G296900--Sobic001G395400 Sobic007G166100 Sobic007G166100 Sobic001G296900--Sobic007G166100 Sobic003G436300 Sobic003G436300 Sobic001G296900--Sobic003G436300 Sobic003G053800--Sobic001G296900 Sobic003G053800--Sobic002G105200 Sobic003G053800--Sobic010G020300 Sobic001G085100 Sobic001G085100 Sobic003G053800--Sobic001G085100 Sobic001G124200 Sobic001G124200 Sobic003G053800--Sobic001G124200 Sobic001G161900 Sobic001G161900 Sobic003G053800--Sobic001G161900 Sobic010G164000 Sobic010G164000 Sobic003G053800--Sobic010G164000 Sobic008G076800 Sobic008G076800 Sobic003G053800--Sobic008G076800 Sobic002G303600 Sobic002G303600 Sobic003G053800--Sobic002G303600 Sobic009G243100--Sobic001G296900 Sobic010G049100 Sobic010G049100 Sobic009G243100--Sobic010G049100 Sobic002G111200 Sobic002G111200 Sobic009G243100--Sobic002G111200 Sobic002G332400 Sobic002G332400 Sobic009G243100--Sobic002G332400 Sobic002G071000 Sobic002G071000 Sobic009G243100--Sobic002G071000 Sobic002G039000 Sobic002G039000 Sobic009G243100--Sobic002G039000 Sobic009G004600 Sobic009G004600 Sobic009G243100--Sobic009G004600 Sobic002G364800 Sobic002G364800 Sobic009G243100--Sobic002G364800 Sobic009G243100--Sobic003G422900 Sobic010G020300--Sobic001G124200 Sobic010G205800 Sobic010G205800 Sobic010G020300--Sobic010G205800 Sobic004G065000 Sobic004G065000 Sobic010G020300--Sobic004G065000 Sobic001G390800 Sobic001G390800 Sobic010G020300--Sobic001G390800 Sobic003G352200 Sobic003G352200 Sobic010G020300--Sobic003G352200 Sobic004G177300 Sobic004G177300 Sobic010G020300--Sobic004G177300 Sobic010G278200 Sobic010G278200 Sobic010G020300--Sobic010G278200 Sobic001G227400 Sobic001G227400 Sobic010G020300--Sobic001G227400 Sobic001G121200 Sobic001G121200 Sobic010G020300--Sobic001G121200 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic007G084100 Sobic007G084100 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic002G347000 Sobic002G347000 Sobic005G160400--Sobic002G347000 Sobic001G473600 Sobic001G473600 Sobic005G160400--Sobic001G473600 Sobic010G265300 Sobic010G265300 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500 Sobic002G382600 Sobic002G382600 Sobic002G105200--Sobic002G382600 Sobic003G416400 Sobic003G416400 Sobic002G105200--Sobic003G416400 Sobic004G237400 Sobic004G237400 Sobic002G105200--Sobic004G237400 Sobic002G105200--Sobic003G053800 Sobic002G105200--Sobic010G020300 Sobic002G105200--Sobic003G352200 Sobic002G105200--Sobic001G296900 Sobic002G105200--Sobic001G473600 Sobic004G091200 Sobic004G091200 Sobic002G105200--Sobic004G091200 Sobic010G020400 Sobic010G020400 Sobic003G422900--Sobic010G020400 Sobic003G155900 Sobic003G155900 Sobic003G422900--Sobic003G155900 Sobic003G422900--Sobic002G303600 Sobic009G164000 Sobic009G164000 Sobic003G422900--Sobic009G164000 Sobic009G044800 Sobic009G044800 Sobic003G422900--Sobic009G044800 Sobic001G392300 Sobic001G392300 Sobic003G422900--Sobic001G392300 Sobic004G257100 Sobic004G257100 Sobic003G422900--Sobic004G257100 Sobic002G256200 Sobic002G256200 Sobic003G422900--Sobic002G256200 Sobic008G082500 Sobic008G082500 Sobic003G422900--Sobic008G082500 Sobic001G395400--Sobic007G166100 Sobic002G400000 Sobic002G400000 Sobic001G395400--Sobic002G400000 Sobic006G263900 Sobic006G263900 Sobic001G395400--Sobic006G263900 Sobic001G395400--Sobic003G416400 Sobic010G168600 Sobic010G168600 Sobic001G395400--Sobic010G168600 Sobic003G077900 Sobic003G077900 Sobic001G395400--Sobic003G077900 Sobic010G000900 Sobic010G000900 Sobic001G395400--Sobic010G000900 Sobic001G057800 Sobic001G057800 Sobic001G395400--Sobic001G057800 Sobic009G165800 Sobic009G165800 Sobic001G395400--Sobic009G165800 Sobic007G166100--Sobic001G395400 Sobic007G166100--Sobic010G000900 Sobic004G356900 Sobic004G356900 Sobic007G166100--Sobic004G356900 Sobic007G166100--Sobic002G400000 Sobic004G104900 Sobic004G104900 Sobic007G166100--Sobic004G104900 Sobic007G166100--Sobic009G004600 Sobic007G166100--Sobic001G085100 Sobic010G027600 Sobic010G027600 Sobic007G166100--Sobic010G027600 Sobic004G066200 Sobic004G066200 Sobic007G166100--Sobic004G066200 Sobic006G034000 Sobic006G034000 Sobic003G436300--Sobic006G034000 Sobic003G436300--Sobic001G085100 Sobic003G436300--Sobic010G020300 Sobic003G436300--Sobic001G057800 Sobic003G116900 Sobic003G116900 Sobic003G436300--Sobic003G116900 Sobic003G312200 Sobic003G312200 Sobic003G436300--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic003G436300--Sobic001G323000 Sobic004G348900 Sobic004G348900 Sobic003G436300--Sobic004G348900 Sobic003G436300--Sobic001G296900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.