Gene annotation
Transcriptome id Sobic.003G422900.1,Sobic.003G422900.3,Sobic.003G422900.2
Synonym Sb03g045590
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6Q850
Pfam PF00076
Panther DB PTHR24012
NCBI CDD KOG0145; RNA-binding protein ELAV/HU (RRM superfamily) KOG0148Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology K14411; RNA-binding protein Musashi
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G36960 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os01g71770.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026046 , Zm00025a039152
Brachypodium -
Barley -
Wheat TraesCS3D02G480300 , TraesCS3D02G480300 , TraesCS3B02G532600 , TraesCS3B02G532600 , TraesCS3B02G532600 , TraesCS3B02G532600 , TraesCS3B02G532600 , TraesCS3A02G485000 , TraesCS3A02G485000 , TraesCS3A02G485000 , TraesCS3A02G485000
Populus -


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cDNA sequences
Sobic.003G422900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
2 Sobic.003G155900 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
3 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
4 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
5 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
6 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
7 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
8 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
9 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
10 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
11 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
12 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
13 Sobic.002G300700 peptidyl-prolyl cis-trans isomerase, putative, expressed -
14 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
15 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
16 Sobic.008G033500 nucleolar GTPase, putative, expressed -
17 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.001G085100 expressed protein -
19 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
20 Sobic.008G118200 vesicle tethering family protein, putative, expressed -


Gene co-expression network
sample Sobic003G422900 Sobic003G422900 Sobic010G020400 Sobic010G020400 Sobic003G422900--Sobic010G020400 Sobic003G155900 Sobic003G155900 Sobic003G422900--Sobic003G155900 Sobic002G303600 Sobic002G303600 Sobic003G422900--Sobic002G303600 Sobic009G164000 Sobic009G164000 Sobic003G422900--Sobic009G164000 Sobic009G044800 Sobic009G044800 Sobic003G422900--Sobic009G044800 Sobic001G392300 Sobic001G392300 Sobic003G422900--Sobic001G392300 Sobic004G257100 Sobic004G257100 Sobic003G422900--Sobic004G257100 Sobic002G256200 Sobic002G256200 Sobic003G422900--Sobic002G256200 Sobic008G082500 Sobic008G082500 Sobic003G422900--Sobic008G082500 Sobic002G020700 Sobic002G020700 Sobic010G020400--Sobic002G020700 Sobic001G049400 Sobic001G049400 Sobic010G020400--Sobic001G049400 Sobic003G338500 Sobic003G338500 Sobic010G020400--Sobic003G338500 Sobic001G014800 Sobic001G014800 Sobic010G020400--Sobic001G014800 Sobic002G008800 Sobic002G008800 Sobic010G020400--Sobic002G008800 Sobic008G055900 Sobic008G055900 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic010G020400--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic010G020400--Sobic010G223300 Sobic003G352200 Sobic003G352200 Sobic003G155900--Sobic003G352200 Sobic007G163100 Sobic007G163100 Sobic003G155900--Sobic007G163100 Sobic001G124200 Sobic001G124200 Sobic003G155900--Sobic001G124200 Sobic006G012500 Sobic006G012500 Sobic003G155900--Sobic006G012500 Sobic003G155900--Sobic001G392300 Sobic002G262900 Sobic002G262900 Sobic003G155900--Sobic002G262900 Sobic010G205800 Sobic010G205800 Sobic003G155900--Sobic010G205800 Sobic003G155900--Sobic003G422900 Sobic002G045600 Sobic002G045600 Sobic003G155900--Sobic002G045600 Sobic010G261600 Sobic010G261600 Sobic002G303600--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic006G180000 Sobic006G180000 Sobic002G303600--Sobic006G180000 Sobic007G218000 Sobic007G218000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic002G303600--Sobic003G422900 Sobic009G092400 Sobic009G092400 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic004G176400 Sobic004G176400 Sobic009G164000--Sobic004G176400 Sobic009G164000--Sobic003G422900 Sobic002G371700 Sobic002G371700 Sobic009G164000--Sobic002G371700 Sobic001G114500 Sobic001G114500 Sobic009G164000--Sobic001G114500 Sobic003G132000 Sobic003G132000 Sobic009G164000--Sobic003G132000 Sobic008G103300 Sobic008G103300 Sobic009G164000--Sobic008G103300 Sobic004G353000 Sobic004G353000 Sobic009G164000--Sobic004G353000 Sobic002G300700 Sobic002G300700 Sobic009G164000--Sobic002G300700 Sobic001G249700 Sobic001G249700 Sobic009G164000--Sobic001G249700 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic004G131300 Sobic004G131300 Sobic004G257100--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic004G257100--Sobic001G251100 Sobic004G092500 Sobic004G092500 Sobic004G257100--Sobic004G092500 Sobic006G073200 Sobic006G073200 Sobic004G257100--Sobic006G073200 Sobic005G172500 Sobic005G172500 Sobic004G257100--Sobic005G172500 Sobic008G004600 Sobic008G004600 Sobic004G257100--Sobic008G004600 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic004G257100--Sobic001G392300 Sobic010G269100 Sobic010G269100 Sobic002G256200--Sobic010G269100 Sobic003G099300 Sobic003G099300 Sobic002G256200--Sobic003G099300 Sobic002G256200--Sobic003G422900 Sobic001G085100 Sobic001G085100 Sobic002G256200--Sobic001G085100 Sobic009G117500 Sobic009G117500 Sobic002G256200--Sobic009G117500 Sobic002G268400 Sobic002G268400 Sobic002G256200--Sobic002G268400 Sobic001G428800 Sobic001G428800 Sobic002G256200--Sobic001G428800 Sobic006G203100 Sobic006G203100 Sobic002G256200--Sobic006G203100 Sobic006G056200 Sobic006G056200 Sobic002G256200--Sobic006G056200 Sobic009G084900 Sobic009G084900 Sobic008G082500--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic008G082500--Sobic010G185400 Sobic010G206300 Sobic010G206300 Sobic008G082500--Sobic010G206300 Sobic006G077200 Sobic006G077200 Sobic008G082500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic008G082500--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic008G082500--Sobic001G493200 Sobic008G082500--Sobic002G020700 Sobic001G145400 Sobic001G145400 Sobic008G082500--Sobic001G145400 Sobic004G023100 Sobic004G023100 Sobic008G082500--Sobic004G023100
Octagon: transcription factors


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