Gene annotation
Transcriptome id Sobic.002G256200.1
Synonym Sb02g029140
Functional annotation cyclin, putative, expressed
UniProt C5X4N7
Pfam PF00134
Panther DB PTHR10026 PTHR10026:SF7
NCBI CDD KOG0794; CDK8 kinase-activating protein cyclin C
KEGG Orthology K15161; CCNC, cyclin-C
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity GO:0016592mediator complex GO:0016538cyclin-dependent protein serine/threonine kinase regulator activity


Orthologs (automatic annotation)
TAIR AT5G48640 : Cyclin family protein
RAP-DB (Rice) LOC_Os09g32680.1 : cyclin, putative, expressed
MaizeGDB (Corn) Zm00025a047555
Brachypodium PNT69323 , KQK01084 , KQK01082 , KQK01083 , PNT64885
Barley HORVU6Hr1G083890.10 , HORVU6Hr1G083890.8 , HORVU6Hr1G083890.9 , HORVU6Hr1G083890.2 , HORVU6Hr1G083890.3 , HORVU6Hr1G083890.1 , HORVU6Hr1G083890.6 , HORVU6Hr1G083890.7 , HORVU6Hr1G083890.4 , HORVU6Hr1G083890.5
Wheat TraesCS5A02G282200 , TraesCS5A02G282200 , TraesCS6D02G332100 , TraesCS5D02G289300 , TraesCS5D02G289300 , TraesCS5D02G289300 , TraesCS5D02G289300 , TraesCS5B02G281600 , TraesCS5B02G281600 , TraesCS5B02G281600 , TraesCS5A02G057600 , TraesCS6A02G349600 , TraesCS6B02G382700
Populus -


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cDNA sequences
Sobic.002G256200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G269100 zinc finger family protein, putative, expressed -
2 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
3 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
4 Sobic.001G085100 expressed protein -
5 Sobic.009G117500 lipase precursor, putative, expressed -
6 Sobic.002G268400 expressed protein -
7 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
8 Sobic.006G203100 expressed protein -
9 Sobic.006G056200 transport protein particle component, Bet3, domain containing protein, expressed -
10 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
11 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
12 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
13 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
14 Sobic.010G057900 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
15 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
16 Sobic.009G257200 CK1_CaseinKinase_1.8 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
17 Sobic.K004100 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.010G176500 expressed protein -
19 Sobic.008G004400 GIL1, putative, expressed -
20 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5


Gene co-expression network
sample Sobic002G256200 Sobic002G256200 Sobic010G269100 Sobic010G269100 Sobic002G256200--Sobic010G269100 Sobic003G099300 Sobic003G099300 Sobic002G256200--Sobic003G099300 Sobic003G422900 Sobic003G422900 Sobic002G256200--Sobic003G422900 Sobic001G085100 Sobic001G085100 Sobic002G256200--Sobic001G085100 Sobic009G117500 Sobic009G117500 Sobic002G256200--Sobic009G117500 Sobic002G268400 Sobic002G268400 Sobic002G256200--Sobic002G268400 Sobic001G428800 Sobic001G428800 Sobic002G256200--Sobic001G428800 Sobic006G203100 Sobic006G203100 Sobic002G256200--Sobic006G203100 Sobic006G056200 Sobic006G056200 Sobic002G256200--Sobic006G056200 Sobic010G269100--Sobic003G099300 Sobic010G269100--Sobic002G256200 Sobic008G092300 Sobic008G092300 Sobic010G269100--Sobic008G092300 Sobic010G269100--Sobic006G056200 Sobic010G239800 Sobic010G239800 Sobic010G269100--Sobic010G239800 Sobic010G269100--Sobic002G268400 Sobic006G278700 Sobic006G278700 Sobic010G269100--Sobic006G278700 Sobic010G085200 Sobic010G085200 Sobic010G269100--Sobic010G085200 Sobic009G033900 Sobic009G033900 Sobic010G269100--Sobic009G033900 Sobic003G099300--Sobic010G269100 Sobic004G039600 Sobic004G039600 Sobic003G099300--Sobic004G039600 Sobic005G216300 Sobic005G216300 Sobic003G099300--Sobic005G216300 SobicK004100 SobicK004100 Sobic003G099300--SobicK004100 Sobic001G369000 Sobic001G369000 Sobic003G099300--Sobic001G369000 Sobic005G115500 Sobic005G115500 Sobic003G099300--Sobic005G115500 Sobic003G099300--Sobic002G256200 Sobic003G099300--Sobic006G056200 Sobic009G231700 Sobic009G231700 Sobic003G099300--Sobic009G231700 Sobic010G020400 Sobic010G020400 Sobic003G422900--Sobic010G020400 Sobic003G155900 Sobic003G155900 Sobic003G422900--Sobic003G155900 Sobic002G303600 Sobic002G303600 Sobic003G422900--Sobic002G303600 Sobic009G164000 Sobic009G164000 Sobic003G422900--Sobic009G164000 Sobic009G044800 Sobic009G044800 Sobic003G422900--Sobic009G044800 Sobic001G392300 Sobic001G392300 Sobic003G422900--Sobic001G392300 Sobic004G257100 Sobic004G257100 Sobic003G422900--Sobic004G257100 Sobic003G422900--Sobic002G256200 Sobic008G082500 Sobic008G082500 Sobic003G422900--Sobic008G082500 Sobic006G101700 Sobic006G101700 Sobic001G085100--Sobic006G101700 Sobic001G261436 Sobic001G261436 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G085100--Sobic007G167900 Sobic001G206900 Sobic001G206900 Sobic001G085100--Sobic001G206900 Sobic001G047400 Sobic001G047400 Sobic001G085100--Sobic001G047400 Sobic004G066200 Sobic004G066200 Sobic001G085100--Sobic004G066200 Sobic001G091300 Sobic001G091300 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200 Sobic009G117500--Sobic002G256200 Sobic003G338500 Sobic003G338500 Sobic009G117500--Sobic003G338500 Sobic008G055900 Sobic008G055900 Sobic009G117500--Sobic008G055900 Sobic004G275700 Sobic004G275700 Sobic009G117500--Sobic004G275700 Sobic009G117500--Sobic003G422900 Sobic010G002400 Sobic010G002400 Sobic009G117500--Sobic010G002400 Sobic002G020700 Sobic002G020700 Sobic009G117500--Sobic002G020700 Sobic002G308500 Sobic002G308500 Sobic009G117500--Sobic002G308500 Sobic009G117500--Sobic006G056200 Sobic010G057900 Sobic010G057900 Sobic002G268400--Sobic010G057900 Sobic001G152000 Sobic001G152000 Sobic002G268400--Sobic001G152000 Sobic004G074300 Sobic004G074300 Sobic002G268400--Sobic004G074300 Sobic006G252100 Sobic006G252100 Sobic002G268400--Sobic006G252100 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic004G356900 Sobic004G356900 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic001G358500 Sobic001G358500 Sobic001G428800--Sobic001G358500 Sobic001G449900 Sobic001G449900 Sobic001G428800--Sobic001G449900 Sobic010G230600 Sobic010G230600 Sobic001G428800--Sobic010G230600 Sobic004G092500 Sobic004G092500 Sobic001G428800--Sobic004G092500 Sobic010G223300 Sobic010G223300 Sobic001G428800--Sobic010G223300 Sobic001G211900 Sobic001G211900 Sobic001G428800--Sobic001G211900 Sobic001G099900 Sobic001G099900 Sobic001G428800--Sobic001G099900 Sobic001G428800--Sobic010G020400 Sobic009G139300 Sobic009G139300 Sobic001G428800--Sobic009G139300 Sobic006G203100--Sobic002G256200 Sobic010G073100 Sobic010G073100 Sobic006G203100--Sobic010G073100 Sobic002G341800 Sobic002G341800 Sobic006G203100--Sobic002G341800 Sobic008G145100 Sobic008G145100 Sobic006G203100--Sobic008G145100 Sobic001G338400 Sobic001G338400 Sobic006G203100--Sobic001G338400 Sobic001G145500 Sobic001G145500 Sobic006G203100--Sobic001G145500 Sobic002G029300 Sobic002G029300 Sobic006G203100--Sobic002G029300 Sobic001G249700 Sobic001G249700 Sobic006G203100--Sobic001G249700 Sobic006G203100--Sobic006G183000 Sobic006G056200--Sobic004G039600 Sobic006G056200--Sobic008G055900 Sobic008G129600 Sobic008G129600 Sobic006G056200--Sobic008G129600 Sobic006G056200--Sobic003G099300 Sobic009G226400 Sobic009G226400 Sobic006G056200--Sobic009G226400 Sobic008G103300 Sobic008G103300 Sobic006G056200--Sobic008G103300 Sobic006G056200--Sobic001G369000 Sobic006G056200--SobicK004100 Sobic006G056200--Sobic002G029300
Octagon: transcription factors


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