Gene annotation
Transcriptome id Sobic.001G249700.2,Sobic.001G249700.3,Sobic.001G249700.4
Synonym Sb01g022090
Functional annotation expressed protein
UniProt A0A1B6QKU4
Pfam PF10178
Panther DB PTHR31051 PTHR31051:SF1
NCBI CDD KOG4828; Uncharacterized conserved protein
KEGG Orthology K11877; PSMG3, proteasome assembly chaperone 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G14710 : -
RAP-DB (Rice) LOC_Os10g25600.1 : expressed protein
MaizeGDB (Corn) Zm00025a006949
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
2 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
3 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
4 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
5 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
6 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
7 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
8 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
9 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
10 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31
11 Sobic.006G183000 RING zinc finger protein, putative, expressed -
12 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
13 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
14 Sobic.007G014900 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
15 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
16 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
17 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
18 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
19 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
20 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7


Gene co-expression network
sample Sobic001G249700 Sobic001G249700 Sobic009G033900 Sobic009G033900 Sobic001G249700--Sobic009G033900 Sobic010G247400 Sobic010G247400 Sobic001G249700--Sobic010G247400 Sobic009G164000 Sobic009G164000 Sobic001G249700--Sobic009G164000 Sobic004G156800 Sobic004G156800 Sobic001G249700--Sobic004G156800 Sobic002G256200 Sobic002G256200 Sobic001G249700--Sobic002G256200 Sobic001G259000 Sobic001G259000 Sobic001G249700--Sobic001G259000 Sobic006G270600 Sobic006G270600 Sobic001G249700--Sobic006G270600 Sobic001G168900 Sobic001G168900 Sobic001G249700--Sobic001G168900 Sobic004G356900 Sobic004G356900 Sobic001G249700--Sobic004G356900 Sobic006G183000 Sobic006G183000 Sobic009G033900--Sobic006G183000 Sobic002G268400 Sobic002G268400 Sobic009G033900--Sobic002G268400 Sobic009G033900--Sobic001G249700 Sobic004G074300 Sobic004G074300 Sobic009G033900--Sobic004G074300 Sobic001G263000 Sobic001G263000 Sobic009G033900--Sobic001G263000 Sobic001G152000 Sobic001G152000 Sobic009G033900--Sobic001G152000 Sobic004G057800 Sobic004G057800 Sobic009G033900--Sobic004G057800 Sobic010G269100 Sobic010G269100 Sobic009G033900--Sobic010G269100 Sobic006G252100 Sobic006G252100 Sobic009G033900--Sobic006G252100 Sobic010G247400--Sobic001G249700 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic003G407600 Sobic003G407600 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic010G247400--Sobic009G033900 Sobic004G176400 Sobic004G176400 Sobic009G164000--Sobic004G176400 Sobic003G422900 Sobic003G422900 Sobic009G164000--Sobic003G422900 Sobic002G371700 Sobic002G371700 Sobic009G164000--Sobic002G371700 Sobic001G114500 Sobic001G114500 Sobic009G164000--Sobic001G114500 Sobic003G132000 Sobic003G132000 Sobic009G164000--Sobic003G132000 Sobic008G103300 Sobic008G103300 Sobic009G164000--Sobic008G103300 Sobic004G353000 Sobic004G353000 Sobic009G164000--Sobic004G353000 Sobic002G300700 Sobic002G300700 Sobic009G164000--Sobic002G300700 Sobic009G164000--Sobic001G249700 Sobic007G102700 Sobic007G102700 Sobic004G156800--Sobic007G102700 Sobic010G237900 Sobic010G237900 Sobic004G156800--Sobic010G237900 Sobic004G156800--Sobic001G259000 Sobic004G156800--Sobic001G527300 Sobic004G129300 Sobic004G129300 Sobic004G156800--Sobic004G129300 Sobic004G156800--Sobic001G114500 Sobic004G156800--Sobic009G164000 Sobic010G007100 Sobic010G007100 Sobic004G156800--Sobic010G007100 Sobic006G204800 Sobic006G204800 Sobic004G156800--Sobic006G204800 Sobic002G256200--Sobic010G269100 Sobic003G099300 Sobic003G099300 Sobic002G256200--Sobic003G099300 Sobic002G256200--Sobic003G422900 Sobic001G085100 Sobic001G085100 Sobic002G256200--Sobic001G085100 Sobic009G117500 Sobic009G117500 Sobic002G256200--Sobic009G117500 Sobic002G256200--Sobic002G268400 Sobic001G428800 Sobic001G428800 Sobic002G256200--Sobic001G428800 Sobic006G203100 Sobic006G203100 Sobic002G256200--Sobic006G203100 Sobic006G056200 Sobic006G056200 Sobic002G256200--Sobic006G056200 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic001G259000--Sobic004G156800 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G145400 Sobic001G145400 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700 Sobic004G155600 Sobic004G155600 Sobic006G270600--Sobic004G155600 Sobic006G270600--Sobic003G132000 Sobic006G270600--Sobic001G259000 Sobic010G264000 Sobic010G264000 Sobic006G270600--Sobic010G264000 Sobic002G295500 Sobic002G295500 Sobic006G270600--Sobic002G295500 Sobic009G131900 Sobic009G131900 Sobic006G270600--Sobic009G131900 Sobic006G014100 Sobic006G014100 Sobic006G270600--Sobic006G014100 Sobic001G492200 Sobic001G492200 Sobic006G270600--Sobic001G492200 Sobic006G270600--Sobic001G114500 Sobic007G187600 Sobic007G187600 Sobic001G168900--Sobic007G187600 Sobic004G307500 Sobic004G307500 Sobic001G168900--Sobic004G307500 Sobic001G168900--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic001G168900--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic001G168900--Sobic009G258400 Sobic001G042200 Sobic001G042200 Sobic001G168900--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic001G168900--Sobic003G132000 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic010G205300 Sobic010G205300 Sobic004G356900--Sobic010G205300 Sobic006G101700 Sobic006G101700 Sobic004G356900--Sobic006G101700 Sobic004G232800 Sobic004G232800 Sobic004G356900--Sobic004G232800 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800
Octagon: transcription factors


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