Gene annotation
Transcriptome id Sobic.001G527300.3,Sobic.001G527300.2,Sobic.001G527300.4
Synonym Sb01g049070
Functional annotation -
UniProt C5X0W4
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF78
NCBI CDD -
KEGG Orthology K14777; DDX47, ATP-dependent RNA helicase DDX47/RRP3
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G60990 : DEA(D/H)-box RNA helicase family protein
RAP-DB (Rice) LOC_Os03g46610.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a018487 , Zm00025a053758 , Zm00025a000301
Brachypodium KQK14841 , KQK14842 , PNT74618 , PNT74619
Barley HORVU2Hr1G022490.9 , HORVU2Hr1G022490.8 , HORVU2Hr1G022490.7 , HORVU2Hr1G022490.6 , HORVU2Hr1G022490.5 , HORVU2Hr1G022490.4 , HORVU2Hr1G022490.3 , HORVU2Hr1G022490.2 , HORVU2Hr1G022490.1 , HORVU6Hr1G020570.8 , HORVU6Hr1G020570.2 , HORVU6Hr1G020570.1 , HORVU6Hr1G020570.7 , HORVU2Hr1G022490.12 , HORVU2Hr1G022490.11 , HORVU2Hr1G022490.10
Wheat TraesCS6D02G103400 , TraesCS6A02G114900 , TraesCS2D02G131200 , TraesCS2A02G128700 , TraesCS2A02G128700 , TraesCS6B02G142500 , TraesCS2B02G150800 , TraesCS2B02G150800
Populus -


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cDNA sequences
Sobic.001G527300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
2 Sobic.008G147200 tubulin, putative, expressed -
3 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
4 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
5 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
6 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
7 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
8 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
9 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
10 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
11 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
12 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
13 Sobic.005G114400 TBC domain containing protein, expressed -
14 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
15 Sobic.004G325600 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12896: splicing factor, arginine/serine-rich 7
16 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
17 Sobic.004G057100 tubulin-specific chaperone E, putative, expressed -
18 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
19 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
20 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase


Gene co-expression network
sample Sobic001G527300 Sobic001G527300 Sobic004G156800 Sobic004G156800 Sobic001G527300--Sobic004G156800 Sobic008G147200 Sobic008G147200 Sobic001G527300--Sobic008G147200 Sobic009G143800 Sobic009G143800 Sobic001G527300--Sobic009G143800 Sobic001G291800 Sobic001G291800 Sobic001G527300--Sobic001G291800 Sobic010G247400 Sobic010G247400 Sobic001G527300--Sobic010G247400 Sobic010G007100 Sobic010G007100 Sobic001G527300--Sobic010G007100 Sobic006G226300 Sobic006G226300 Sobic001G527300--Sobic006G226300 Sobic001G168900 Sobic001G168900 Sobic001G527300--Sobic001G168900 Sobic004G340400 Sobic004G340400 Sobic001G527300--Sobic004G340400 Sobic007G102700 Sobic007G102700 Sobic004G156800--Sobic007G102700 Sobic010G237900 Sobic010G237900 Sobic004G156800--Sobic010G237900 Sobic001G259000 Sobic001G259000 Sobic004G156800--Sobic001G259000 Sobic004G156800--Sobic001G527300 Sobic004G129300 Sobic004G129300 Sobic004G156800--Sobic004G129300 Sobic001G114500 Sobic001G114500 Sobic004G156800--Sobic001G114500 Sobic009G164000 Sobic009G164000 Sobic004G156800--Sobic009G164000 Sobic004G156800--Sobic010G007100 Sobic006G204800 Sobic006G204800 Sobic004G156800--Sobic006G204800 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic008G147200--Sobic010G007100 Sobic001G346900 Sobic001G346900 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic008G147200--Sobic001G291800 Sobic004G353000 Sobic004G353000 Sobic009G143800--Sobic004G353000 Sobic009G143800--Sobic001G259000 Sobic004G332400 Sobic004G332400 Sobic009G143800--Sobic004G332400 Sobic008G014500 Sobic008G014500 Sobic009G143800--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic009G143800--Sobic010G118000 Sobic006G200700 Sobic006G200700 Sobic009G143800--Sobic006G200700 Sobic009G143800--Sobic008G147200 Sobic008G131000 Sobic008G131000 Sobic009G143800--Sobic008G131000 Sobic009G143800--Sobic001G291800 Sobic001G291800--Sobic004G340400 Sobic001G145400 Sobic001G145400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic001G291800--Sobic004G353000 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G291800--Sobic001G168900 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic010G247400--Sobic001G259000 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic003G407600 Sobic003G407600 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic010G007100--Sobic001G145400 Sobic010G007100--Sobic008G147200 Sobic010G007100--Sobic004G340400 Sobic006G086600 Sobic006G086600 Sobic010G007100--Sobic006G086600 Sobic010G007100--Sobic005G137700 Sobic006G077200 Sobic006G077200 Sobic010G007100--Sobic006G077200 Sobic002G235200 Sobic002G235200 Sobic010G007100--Sobic002G235200 Sobic006G002800 Sobic006G002800 Sobic010G007100--Sobic006G002800 Sobic010G007100--Sobic003G042400 Sobic002G142600 Sobic002G142600 Sobic006G226300--Sobic002G142600 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic006G226300--Sobic003G042400 Sobic004G285000 Sobic004G285000 Sobic006G226300--Sobic004G285000 Sobic006G226300--Sobic008G147200 Sobic006G226300--Sobic005G137700 Sobic003G258900 Sobic003G258900 Sobic006G226300--Sobic003G258900 Sobic001G246500 Sobic001G246500 Sobic006G226300--Sobic001G246500 Sobic007G187600 Sobic007G187600 Sobic001G168900--Sobic007G187600 Sobic004G307500 Sobic004G307500 Sobic001G168900--Sobic004G307500 Sobic001G168900--Sobic002G077900 Sobic001G168900--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic001G168900--Sobic009G258400 Sobic001G042200 Sobic001G042200 Sobic001G168900--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic003G132000 Sobic003G132000 Sobic001G168900--Sobic003G132000 Sobic004G340400--Sobic001G145400 Sobic004G340400--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic004G340400--Sobic004G320500 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500
Octagon: transcription factors


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