Gene annotation
Transcriptome id Sobic.001G334100.1
Synonym APG10, Sb01g032260, HISN3
Functional annotation 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed
UniProt C5WWI2
Pfam PF00977
Panther DB PTHR21235:SF23 PTHR21235
NCBI CDD KOG3055; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
KEGG Orthology K01814; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Gene Ontology GO:0000105; histidine biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G36230 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os05g33260.3 : 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a002894 , Zm00025a043629
Brachypodium KQK06356
Barley HORVU3Hr1G016160.1 , HORVU3Hr1G016160.2 , HORVU1Hr1G061820.4 , HORVU1Hr1G061820.5 , HORVU1Hr1G061820.6 , HORVU1Hr1G061820.2 , HORVU1Hr1G061820.3 , HORVU5Hr1G030850.2 , HORVU5Hr1G030850.1 , HORVU7Hr1G068820.1
Wheat TraesCS1A02G251000 , TraesCS1D02G250600 , TraesCS1B02G261600
Populus PNT40310


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G143500 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
2 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -
3 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
4 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
5 Sobic.005G059400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized PPR-repeat protein, putative, expressed -
6 Sobic.002G142600 NLI interacting factor-like phosphatase, putative, expressed -
7 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
8 Sobic.004G067400 expressed protein -
9 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
10 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
11 Sobic.002G408600 expressed protein -
12 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
13 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
14 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
15 Sobic.008G147200 tubulin, putative, expressed -
16 Sobic.010G015700 pentatricopeptide, putative, expressed -
17 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
18 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
19 Sobic.008G000600 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
20 Sobic.001G393700 expressed protein -


Gene co-expression network
sample Sobic001G334100 Sobic001G334100 Sobic007G143500 Sobic007G143500 Sobic001G334100--Sobic007G143500 Sobic003G184400 Sobic003G184400 Sobic001G334100--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic001G334100--Sobic005G199200 Sobic003G259600 Sobic003G259600 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic006G180700 Sobic006G180700 Sobic001G334100--Sobic006G180700 Sobic004G067400 Sobic004G067400 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic007G143500--Sobic001G334100 Sobic004G307500 Sobic004G307500 Sobic007G143500--Sobic004G307500 Sobic001G168900 Sobic001G168900 Sobic007G143500--Sobic001G168900 Sobic001G007800 Sobic001G007800 Sobic007G143500--Sobic001G007800 Sobic001G416700 Sobic001G416700 Sobic007G143500--Sobic001G416700 Sobic005G178700 Sobic005G178700 Sobic007G143500--Sobic005G178700 Sobic008G098600 Sobic008G098600 Sobic007G143500--Sobic008G098600 Sobic002G005000 Sobic002G005000 Sobic007G143500--Sobic002G005000 Sobic004G235500 Sobic004G235500 Sobic007G143500--Sobic004G235500 Sobic003G184400--Sobic005G199200 Sobic003G184400--Sobic001G334100 Sobic003G184400--Sobic002G142600 Sobic009G074700 Sobic009G074700 Sobic003G184400--Sobic009G074700 Sobic004G036700 Sobic004G036700 Sobic003G184400--Sobic004G036700 Sobic001G090300 Sobic001G090300 Sobic003G184400--Sobic001G090300 Sobic003G184400--Sobic002G005000 Sobic005G137700 Sobic005G137700 Sobic003G184400--Sobic005G137700 Sobic002G408600 Sobic002G408600 Sobic003G184400--Sobic002G408600 Sobic005G199200--Sobic001G090300 Sobic005G199200--Sobic003G184400 Sobic004G128200 Sobic004G128200 Sobic005G199200--Sobic004G128200 Sobic005G199200--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic005G199200--Sobic009G104900 Sobic001G373000 Sobic001G373000 Sobic005G199200--Sobic001G373000 Sobic010G278600 Sobic010G278600 Sobic005G199200--Sobic010G278600 Sobic005G199200--Sobic002G142600 Sobic003G246000 Sobic003G246000 Sobic005G199200--Sobic003G246000 Sobic003G361400 Sobic003G361400 Sobic003G259600--Sobic003G361400 Sobic003G360300 Sobic003G360300 Sobic003G259600--Sobic003G360300 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic004G038100 Sobic004G038100 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic003G259600--Sobic001G334100 Sobic005G059400--Sobic001G334100 Sobic005G059400--Sobic003G259600 Sobic002G218700 Sobic002G218700 Sobic005G059400--Sobic002G218700 Sobic001G347100 Sobic001G347100 Sobic005G059400--Sobic001G347100 Sobic005G059400--Sobic006G180700 Sobic005G059400--Sobic005G199200 Sobic005G059400--Sobic004G036700 Sobic002G132600 Sobic002G132600 Sobic005G059400--Sobic002G132600 Sobic005G059400--Sobic003G184400 Sobic006G226300 Sobic006G226300 Sobic002G142600--Sobic006G226300 Sobic009G235200 Sobic009G235200 Sobic002G142600--Sobic009G235200 Sobic002G142600--Sobic005G199200 Sobic002G142600--Sobic001G334100 Sobic002G142600--Sobic003G184400 Sobic002G142600--Sobic009G074700 Sobic006G131200 Sobic006G131200 Sobic002G142600--Sobic006G131200 Sobic006G185200 Sobic006G185200 Sobic002G142600--Sobic006G185200 Sobic010G007100 Sobic010G007100 Sobic002G142600--Sobic010G007100 Sobic006G180700--Sobic009G074700 Sobic001G085700 Sobic001G085700 Sobic006G180700--Sobic001G085700 Sobic006G138000 Sobic006G138000 Sobic006G180700--Sobic006G138000 Sobic009G040800 Sobic009G040800 Sobic006G180700--Sobic009G040800 Sobic009G000400 Sobic009G000400 Sobic006G180700--Sobic009G000400 Sobic001G335900 Sobic001G335900 Sobic006G180700--Sobic001G335900 Sobic009G045200 Sobic009G045200 Sobic006G180700--Sobic009G045200 Sobic006G091000 Sobic006G091000 Sobic006G180700--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic006G180700--Sobic005G040900 Sobic001G335500 Sobic001G335500 Sobic004G067400--Sobic001G335500 Sobic004G067400--Sobic001G334100 Sobic006G120800 Sobic006G120800 Sobic004G067400--Sobic006G120800 Sobic004G067400--Sobic002G142700 Sobic003G253400 Sobic003G253400 Sobic004G067400--Sobic003G253400 Sobic004G067400--Sobic002G408600 Sobic009G258400 Sobic009G258400 Sobic004G067400--Sobic009G258400 Sobic009G036200 Sobic009G036200 Sobic004G067400--Sobic009G036200 Sobic010G215900 Sobic010G215900 Sobic004G067400--Sobic010G215900 Sobic002G112600 Sobic002G112600 Sobic005G000300--Sobic002G112600 Sobic004G031300 Sobic004G031300 Sobic005G000300--Sobic004G031300 Sobic010G091500 Sobic010G091500 Sobic005G000300--Sobic010G091500 Sobic003G123200 Sobic003G123200 Sobic005G000300--Sobic003G123200 Sobic010G224700 Sobic010G224700 Sobic005G000300--Sobic010G224700 Sobic005G000300--Sobic001G334100 Sobic009G246500 Sobic009G246500 Sobic005G000300--Sobic009G246500 Sobic002G378100 Sobic002G378100 Sobic005G000300--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic005G000300--Sobic008G163500
Octagon: transcription factors


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