Gene annotation
Transcriptome id Sobic.010G278600.1
Synonym
Functional annotation FG-GAP repeat-containing protein, putative, expressed
UniProt C5Z2N6
Pfam -
Panther DB PTHR34284 PTHR34284:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G51050 : FG-GAP repeat-containing protein
RAP-DB (Rice) LOC_Os02g01070.1 : FG-GAP repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018589
Brachypodium PNT65650
Barley HORVU6Hr1G001660.3 , HORVU6Hr1G001660.2 , HORVU6Hr1G001660.1 , HORVU6Hr1G001660.7 , HORVU6Hr1G001660.6 , HORVU6Hr1G001660.5 , HORVU6Hr1G001660.4
Wheat TraesCS6B02G006400 , TraesCS6A02G001600 , TraesCS6D02G004200 , TraesCS2B02G586700 , TraesCS2B02G586700
Populus -


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cDNA sequences
Sobic.010G278600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
2 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
3 Sobic.002G408600 expressed protein -
4 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
5 Sobic.004G236800 MAG2, putative, expressed -
6 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
7 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
8 Sobic.006G131200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03018: RPC1, DNA-directed RNA polymerase III subunit RPC1
9 Sobic.001G393700 expressed protein -
10 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
11 Sobic.010G099800 growth regulator related protein, putative, expressed -
12 Sobic.001G526300 WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
13 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
14 Sobic.009G045200 double-stranded RNA binding motif containing protein, expressed -
15 Sobic.010G096000 OsDegp10 - Putative Deg protease homologue, expressed -
16 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
17 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
19 Sobic.007G027700 expressed protein -
20 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G278600 Sobic010G278600 Sobic009G040800 Sobic009G040800 Sobic010G278600--Sobic009G040800 Sobic009G074700 Sobic009G074700 Sobic010G278600--Sobic009G074700 Sobic002G408600 Sobic002G408600 Sobic010G278600--Sobic002G408600 Sobic004G285000 Sobic004G285000 Sobic010G278600--Sobic004G285000 Sobic004G236800 Sobic004G236800 Sobic010G278600--Sobic004G236800 Sobic004G246100 Sobic004G246100 Sobic010G278600--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic010G278600--Sobic001G042200 Sobic006G131200 Sobic006G131200 Sobic010G278600--Sobic006G131200 Sobic001G393700 Sobic001G393700 Sobic010G278600--Sobic001G393700 Sobic009G040800--Sobic010G278600 Sobic006G091000 Sobic006G091000 Sobic009G040800--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic009G040800--Sobic004G246100 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic001G246500 Sobic001G246500 Sobic009G074700--Sobic001G246500 Sobic010G202600 Sobic010G202600 Sobic009G074700--Sobic010G202600 Sobic009G074700--Sobic010G278600 Sobic006G180700 Sobic006G180700 Sobic009G074700--Sobic006G180700 Sobic002G259800 Sobic002G259800 Sobic009G074700--Sobic002G259800 Sobic009G000400 Sobic009G000400 Sobic009G074700--Sobic009G000400 Sobic002G262700 Sobic002G262700 Sobic009G074700--Sobic002G262700 Sobic009G195200 Sobic009G195200 Sobic009G074700--Sobic009G195200 Sobic006G138000 Sobic006G138000 Sobic009G074700--Sobic006G138000 Sobic002G408600--Sobic010G278600 Sobic002G408600--Sobic009G074700 Sobic001G334100 Sobic001G334100 Sobic002G408600--Sobic001G334100 Sobic005G199200 Sobic005G199200 Sobic002G408600--Sobic005G199200 Sobic009G126800 Sobic009G126800 Sobic002G408600--Sobic009G126800 Sobic002G408600--Sobic002G262700 Sobic001G335500 Sobic001G335500 Sobic002G408600--Sobic001G335500 Sobic003G184400 Sobic003G184400 Sobic002G408600--Sobic003G184400 Sobic004G067400 Sobic004G067400 Sobic002G408600--Sobic004G067400 Sobic004G086200 Sobic004G086200 Sobic004G285000--Sobic004G086200 Sobic004G111000 Sobic004G111000 Sobic004G285000--Sobic004G111000 Sobic001G346900 Sobic001G346900 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic009G151200 Sobic009G151200 Sobic004G285000--Sobic009G151200 Sobic010G215900 Sobic010G215900 Sobic004G285000--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300 Sobic004G141800 Sobic004G141800 Sobic004G236800--Sobic004G141800 Sobic002G430300 Sobic002G430300 Sobic004G236800--Sobic002G430300 Sobic003G405500 Sobic003G405500 Sobic004G236800--Sobic003G405500 Sobic003G152400 Sobic003G152400 Sobic004G236800--Sobic003G152400 Sobic002G063900 Sobic002G063900 Sobic004G236800--Sobic002G063900 Sobic004G236800--Sobic010G278600 Sobic004G236800--Sobic004G246100 Sobic010G187600 Sobic010G187600 Sobic004G236800--Sobic010G187600 Sobic001G145400 Sobic001G145400 Sobic004G236800--Sobic001G145400 Sobic004G246100--Sobic008G149800 Sobic008G153000 Sobic008G153000 Sobic004G246100--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic004G246100--Sobic007G061700 Sobic004G246100--Sobic002G063900 Sobic008G173100 Sobic008G173100 Sobic004G246100--Sobic008G173100 Sobic006G116100 Sobic006G116100 Sobic004G246100--Sobic006G116100 Sobic006G046700 Sobic006G046700 Sobic004G246100--Sobic006G046700 Sobic009G137100 Sobic009G137100 Sobic004G246100--Sobic009G137100 Sobic002G260400 Sobic002G260400 Sobic004G246100--Sobic002G260400 Sobic010G077500 Sobic010G077500 Sobic001G042200--Sobic010G077500 Sobic004G345400 Sobic004G345400 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic008G058800 Sobic008G058800 Sobic001G042200--Sobic008G058800 Sobic007G056500 Sobic007G056500 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic007G042900 Sobic007G042900 Sobic001G042200--Sobic007G042900 Sobic009G249700 Sobic009G249700 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic003G042400 Sobic003G042400 Sobic006G131200--Sobic003G042400 Sobic006G131200--Sobic009G074700 Sobic006G131200--Sobic001G246500 Sobic006G131200--Sobic004G086200 Sobic006G131200--Sobic010G278600 Sobic002G079100 Sobic002G079100 Sobic006G131200--Sobic002G079100 Sobic006G131200--Sobic001G346900 Sobic006G131200--Sobic009G040800 Sobic006G131200--Sobic006G180700 Sobic001G393700--Sobic002G430300 Sobic001G393700--Sobic001G145400 Sobic010G099800 Sobic010G099800 Sobic001G393700--Sobic010G099800 Sobic005G114800 Sobic005G114800 Sobic001G393700--Sobic005G114800 Sobic006G224800 Sobic006G224800 Sobic001G393700--Sobic006G224800 Sobic001G103300 Sobic001G103300 Sobic001G393700--Sobic001G103300 Sobic001G393700--Sobic003G405500 Sobic003G240700 Sobic003G240700 Sobic001G393700--Sobic003G240700 Sobic009G045200 Sobic009G045200 Sobic001G393700--Sobic009G045200
Octagon: transcription factors


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