Gene annotation
Transcriptome id Sobic.006G180700.2,Sobic.006G180700.1
Synonym CHA19, CHR19, ETL1, Sb06g025530
Functional annotation SNF2 family N-terminal domain containing protein, expressed
UniProt A0A1B6PMK8 , A0A1B6PMN2
Pfam PF04851 PF00271
Panther DB PTHR10799
NCBI CDD KOG1002; Nucleotide excision repair protein RAD16 KOG1001Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily KOG1001Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
KEGG Orthology K14439; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G02090 : SNF2 domain-containing protein / helicase domain-containing protein
RAP-DB (Rice) LOC_Os04g47830.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010197
Brachypodium KQJ84073 , KQJ84075 , KQJ84074
Barley -
Wheat TraesCS2D02G400400 , TraesCS2D02G400400 , TraesCS2B02G421200 , TraesCS2B02G421200 , TraesCS2B02G421200 , TraesCS2A02G403300 , TraesCS2A02G403300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
2 Sobic.001G085700 STE_PAK_Ste20_KHSh_GCKh_HPKh.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
3 Sobic.006G138000 expressed protein -
4 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
5 Sobic.009G000400 expressed protein -
6 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
7 Sobic.009G045200 double-stranded RNA binding motif containing protein, expressed -
8 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
9 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
10 Sobic.006G131200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03018: RPC1, DNA-directed RNA polymerase III subunit RPC1
11 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
12 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.007G056700 AP2/EREBP transcription factor BABY BOOM, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
14 Sobic.001G413800 expressed protein K13141: integrator complex subunit 4
15 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
16 Sobic.001G051700 expressed protein -
17 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
18 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
19 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
20 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit


Gene co-expression network
sample Sobic006G180700 Sobic006G180700 Sobic009G074700 Sobic009G074700 Sobic006G180700--Sobic009G074700 Sobic001G085700 Sobic001G085700 Sobic006G180700--Sobic001G085700 Sobic006G138000 Sobic006G138000 Sobic006G180700--Sobic006G138000 Sobic009G040800 Sobic009G040800 Sobic006G180700--Sobic009G040800 Sobic009G000400 Sobic009G000400 Sobic006G180700--Sobic009G000400 Sobic001G335900 Sobic001G335900 Sobic006G180700--Sobic001G335900 Sobic009G045200 Sobic009G045200 Sobic006G180700--Sobic009G045200 Sobic006G091000 Sobic006G091000 Sobic006G180700--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic006G180700--Sobic005G040900 Sobic001G246500 Sobic001G246500 Sobic009G074700--Sobic001G246500 Sobic010G202600 Sobic010G202600 Sobic009G074700--Sobic010G202600 Sobic010G278600 Sobic010G278600 Sobic009G074700--Sobic010G278600 Sobic009G074700--Sobic006G180700 Sobic002G259800 Sobic002G259800 Sobic009G074700--Sobic002G259800 Sobic009G074700--Sobic009G000400 Sobic002G262700 Sobic002G262700 Sobic009G074700--Sobic002G262700 Sobic009G195200 Sobic009G195200 Sobic009G074700--Sobic009G195200 Sobic009G074700--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G085700--Sobic001G518400 Sobic001G085700--Sobic006G180700 Sobic001G085700--Sobic006G138000 Sobic001G085700--Sobic001G335900 Sobic001G170100 Sobic001G170100 Sobic001G085700--Sobic001G170100 Sobic007G056700 Sobic007G056700 Sobic001G085700--Sobic007G056700 Sobic010G275500 Sobic010G275500 Sobic001G085700--Sobic010G275500 Sobic001G085700--Sobic009G074700 Sobic001G267900 Sobic001G267900 Sobic001G085700--Sobic001G267900 Sobic006G138000--Sobic001G170100 Sobic006G138000--Sobic001G518400 Sobic006G138000--Sobic001G335900 Sobic001G369000 Sobic001G369000 Sobic006G138000--Sobic001G369000 Sobic006G138000--Sobic010G275500 Sobic003G240700 Sobic003G240700 Sobic006G138000--Sobic003G240700 Sobic003G187500 Sobic003G187500 Sobic006G138000--Sobic003G187500 Sobic001G426600 Sobic001G426600 Sobic006G138000--Sobic001G426600 Sobic010G053800 Sobic010G053800 Sobic006G138000--Sobic010G053800 Sobic009G040800--Sobic010G278600 Sobic009G040800--Sobic006G091000 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic009G000400--Sobic009G074700 Sobic006G028700 Sobic006G028700 Sobic009G000400--Sobic006G028700 Sobic009G000400--Sobic009G040800 Sobic009G000400--Sobic006G180700 Sobic002G115500 Sobic002G115500 Sobic009G000400--Sobic002G115500 Sobic007G026000 Sobic007G026000 Sobic009G000400--Sobic007G026000 Sobic009G000400--Sobic005G040900 Sobic010G279900 Sobic010G279900 Sobic009G000400--Sobic010G279900 Sobic009G000400--Sobic001G085700 Sobic001G335900--Sobic001G369000 Sobic001G335900--Sobic006G138000 Sobic001G335900--Sobic001G518400 Sobic001G335900--Sobic001G170100 Sobic001G335900--Sobic003G240700 Sobic009G229600 Sobic009G229600 Sobic001G335900--Sobic009G229600 Sobic009G049400 Sobic009G049400 Sobic001G335900--Sobic009G049400 Sobic007G120500 Sobic007G120500 Sobic001G335900--Sobic007G120500 SobicK004100 SobicK004100 Sobic001G335900--SobicK004100 Sobic001G051700 Sobic001G051700 Sobic009G045200--Sobic001G051700 Sobic003G416700 Sobic003G416700 Sobic009G045200--Sobic003G416700 Sobic001G393700 Sobic001G393700 Sobic009G045200--Sobic001G393700 Sobic006G224800 Sobic006G224800 Sobic009G045200--Sobic006G224800 Sobic010G099800 Sobic010G099800 Sobic009G045200--Sobic010G099800 Sobic007G187600 Sobic007G187600 Sobic009G045200--Sobic007G187600 Sobic002G430300 Sobic002G430300 Sobic009G045200--Sobic002G430300 Sobic009G045200--Sobic006G180700 Sobic009G045200--Sobic001G335900 Sobic006G091000--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic006G091000--Sobic005G178950 Sobic006G091000--Sobic004G353400 Sobic006G091000--Sobic005G040900 Sobic004G347100 Sobic004G347100 Sobic006G091000--Sobic004G347100 Sobic010G074900 Sobic010G074900 Sobic006G091000--Sobic010G074900 Sobic007G139400 Sobic007G139400 Sobic006G091000--Sobic007G139400 Sobic010G172400 Sobic010G172400 Sobic006G091000--Sobic010G172400 Sobic005G114400 Sobic005G114400 Sobic006G091000--Sobic005G114400 Sobic005G040900--Sobic009G040800 Sobic005G040900--Sobic006G091000 Sobic005G040900--Sobic004G347100 Sobic005G040900--Sobic007G139400 Sobic005G040900--Sobic010G074900 Sobic003G205501 Sobic003G205501 Sobic005G040900--Sobic003G205501 Sobic004G345400 Sobic004G345400 Sobic005G040900--Sobic004G345400 Sobic001G472100 Sobic001G472100 Sobic005G040900--Sobic001G472100 Sobic005G040900--Sobic009G129600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.