Gene annotation
Transcriptome id Sobic.001G413800.2,Sobic.001G413800.4,Sobic.001G413800.3,Sobic.001G413800.1
Synonym Sb01g038980
Functional annotation expressed protein
UniProt A0A1Z5SAF5 , A0A1B6QNZ9 , A0A1Z5SAK9
Pfam -
Panther DB PTHR20938 PTHR20938:SF0
NCBI CDD KOG2259; Uncharacterized conserved protein
KEGG Orthology K13141; integrator complex subunit 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G08800 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os03g17340.1 : expressed protein
MaizeGDB (Corn) Zm00025a001902
Brachypodium KQK22257 , PNT77622 , PNT77623 , KQK22260 , KQK22258 , KQK22259 , KQK22255 , KQK22256
Barley HORVU4Hr1G058180.14 , HORVU4Hr1G058180.10 , HORVU4Hr1G058180.11 , HORVU4Hr1G058180.6 , HORVU4Hr1G058180.5 , HORVU4Hr1G058180.2 , HORVU4Hr1G058180.1 , HORVU4Hr1G058180.8 , HORVU4Hr1G058180.9
Wheat TraesCS4A02G103100 , TraesCS4A02G103100 , TraesCS4D02G202000 , TraesCS4B02G201100 , TraesCS4B02G201100 , TraesCS6A02G251900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G477700 WD domain, G-beta repeat domain containing protein, expressed K11807: WDTC1, WD and tetratricopeptide repeats protein 1
2 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
3 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
4 Sobic.006G154100 mRNA cap guanine-N7 methyltransferase 2, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
5 Sobic.006G281700 DUF803 domain containing, putative, expressed -
6 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
7 Sobic.010G204400 phox domain-containing protein, putative, expressed -
8 Sobic.004G068500 CUE domain containing protein, expressed -
9 Sobic.002G363000 csAtPR5, putative, expressed -
10 Sobic.002G127200 CRAL/TRIO domain containing protein, expressed -
11 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
12 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
13 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
14 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
15 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3
16 Sobic.001G085700 STE_PAK_Ste20_KHSh_GCKh_HPKh.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
18 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
19 Sobic.002G429400 PPR repeat containing protein, expressed -
20 Sobic.002G262700 RNA recognition motif containing protein, putative, expressed K13155: U11/U12 small nuclear ribonucleoprotein 35 kDa protein


Gene co-expression network
sample Sobic001G413800 Sobic001G413800 Sobic001G477700 Sobic001G477700 Sobic001G413800--Sobic001G477700 Sobic006G180700 Sobic006G180700 Sobic001G413800--Sobic006G180700 Sobic001G034500 Sobic001G034500 Sobic001G413800--Sobic001G034500 Sobic006G154100 Sobic006G154100 Sobic001G413800--Sobic006G154100 Sobic006G281700 Sobic006G281700 Sobic001G413800--Sobic006G281700 Sobic007G042900 Sobic007G042900 Sobic001G413800--Sobic007G042900 Sobic010G204400 Sobic010G204400 Sobic001G413800--Sobic010G204400 Sobic004G068500 Sobic004G068500 Sobic001G413800--Sobic004G068500 Sobic002G363000 Sobic002G363000 Sobic001G413800--Sobic002G363000 Sobic006G131000 Sobic006G131000 Sobic001G477700--Sobic006G131000 Sobic001G096000 Sobic001G096000 Sobic001G477700--Sobic001G096000 Sobic001G477700--Sobic007G042900 Sobic001G477700--Sobic001G034500 Sobic007G196900 Sobic007G196900 Sobic001G477700--Sobic007G196900 Sobic007G180600 Sobic007G180600 Sobic001G477700--Sobic007G180600 Sobic001G477700--Sobic001G413800 Sobic003G284000 Sobic003G284000 Sobic001G477700--Sobic003G284000 Sobic001G477700--Sobic010G204400 Sobic009G074700 Sobic009G074700 Sobic006G180700--Sobic009G074700 Sobic001G085700 Sobic001G085700 Sobic006G180700--Sobic001G085700 Sobic006G138000 Sobic006G138000 Sobic006G180700--Sobic006G138000 Sobic009G040800 Sobic009G040800 Sobic006G180700--Sobic009G040800 Sobic009G000400 Sobic009G000400 Sobic006G180700--Sobic009G000400 Sobic001G335900 Sobic001G335900 Sobic006G180700--Sobic001G335900 Sobic009G045200 Sobic009G045200 Sobic006G180700--Sobic009G045200 Sobic006G091000 Sobic006G091000 Sobic006G180700--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic006G180700--Sobic005G040900 Sobic001G034500--Sobic001G477700 Sobic001G034500--Sobic003G284000 Sobic001G034500--Sobic006G154100 Sobic001G004100 Sobic001G004100 Sobic001G034500--Sobic001G004100 Sobic001G135500 Sobic001G135500 Sobic001G034500--Sobic001G135500 Sobic001G034500--Sobic001G413800 Sobic003G212900 Sobic003G212900 Sobic001G034500--Sobic003G212900 Sobic001G097500 Sobic001G097500 Sobic001G034500--Sobic001G097500 Sobic001G034500--Sobic007G042900 Sobic002G127200 Sobic002G127200 Sobic006G154100--Sobic002G127200 Sobic006G154100--Sobic001G034500 Sobic005G114500 Sobic005G114500 Sobic006G154100--Sobic005G114500 Sobic006G154100--Sobic001G097500 Sobic006G270600 Sobic006G270600 Sobic006G154100--Sobic006G270600 Sobic006G002800 Sobic006G002800 Sobic006G154100--Sobic006G002800 Sobic003G230600 Sobic003G230600 Sobic006G154100--Sobic003G230600 Sobic004G017300 Sobic004G017300 Sobic006G154100--Sobic004G017300 Sobic003G006400 Sobic003G006400 Sobic006G154100--Sobic003G006400 Sobic002G063900 Sobic002G063900 Sobic006G281700--Sobic002G063900 Sobic002G260400 Sobic002G260400 Sobic006G281700--Sobic002G260400 Sobic004G246100 Sobic004G246100 Sobic006G281700--Sobic004G246100 Sobic003G160000 Sobic003G160000 Sobic006G281700--Sobic003G160000 Sobic009G260650 Sobic009G260650 Sobic006G281700--Sobic009G260650 Sobic001G042200 Sobic001G042200 Sobic006G281700--Sobic001G042200 Sobic007G218000 Sobic007G218000 Sobic006G281700--Sobic007G218000 Sobic006G281700--Sobic010G204400 Sobic002G056701 Sobic002G056701 Sobic006G281700--Sobic002G056701 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic009G249700 Sobic009G249700 Sobic007G042900--Sobic009G249700 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic006G163800 Sobic006G163800 Sobic010G204400--Sobic006G163800 Sobic006G195700 Sobic006G195700 Sobic010G204400--Sobic006G195700 Sobic010G204400--Sobic007G218000 Sobic008G153000 Sobic008G153000 Sobic010G204400--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic010G204400--Sobic010G236400 Sobic007G132100 Sobic007G132100 Sobic010G204400--Sobic007G132100 Sobic003G416700 Sobic003G416700 Sobic010G204400--Sobic003G416700 Sobic010G204400--Sobic006G131000 Sobic010G116600 Sobic010G116600 Sobic010G204400--Sobic010G116600 Sobic007G111100 Sobic007G111100 Sobic004G068500--Sobic007G111100 Sobic002G262700 Sobic002G262700 Sobic004G068500--Sobic002G262700 Sobic004G068500--Sobic001G005600 Sobic002G177000 Sobic002G177000 Sobic004G068500--Sobic002G177000 Sobic007G046200 Sobic007G046200 Sobic004G068500--Sobic007G046200 Sobic004G068500--Sobic001G042200 Sobic004G068500--Sobic007G042900 Sobic003G051200 Sobic003G051200 Sobic004G068500--Sobic003G051200 Sobic001G517500 Sobic001G517500 Sobic004G068500--Sobic001G517500 Sobic002G363000--Sobic001G413800 Sobic008G021000 Sobic008G021000 Sobic002G363000--Sobic008G021000 Sobic002G363000--Sobic001G034500 Sobic003G227100 Sobic003G227100 Sobic002G363000--Sobic003G227100 Sobic001G386100 Sobic001G386100 Sobic002G363000--Sobic001G386100 Sobic002G363000--Sobic003G212900 Sobic002G363000--Sobic007G042900 Sobic002G363000--Sobic001G477700 Sobic006G203300 Sobic006G203300 Sobic002G363000--Sobic006G203300
Octagon: transcription factors


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