Gene annotation
Transcriptome id Sobic.004G068500.1
Synonym Sb04g005730
Functional annotation CUE domain containing protein, expressed
UniProt C5XWY0
Pfam PF02845
Panther DB PTHR31245:SF1 PTHR31245
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G32440 : Ubiquitin system component Cue protein
RAP-DB (Rice) LOC_Os02g09180.1 : CUE domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038687 , Zm00025a019306
Brachypodium KQK16754 , PNT66048 , KQJ93708
Barley HORVU6Hr1G028290.3 , HORVU6Hr1G028290.2 , HORVU6Hr1G028290.1 , HORVU6Hr1G028290.7 , HORVU6Hr1G028290.6 , HORVU6Hr1G028290.5 , HORVU6Hr1G028290.4
Wheat TraesCS6A02G144700 , TraesCS6A02G144700 , TraesCS6A02G144700 , TraesCS6B02G172800 , TraesCS6B02G172800 , TraesCS6B02G172800 , TraesCS6D02G133600 , TraesCS6D02G133600 , TraesCS6D02G133600 , TraesCS6D02G133600
Populus -


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cDNA sequences
Sobic.004G068500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
2 Sobic.002G262700 RNA recognition motif containing protein, putative, expressed K13155: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
3 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
4 Sobic.002G177000 proton pump interactor, putative, expressed -
5 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
6 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
7 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
8 Sobic.003G051200 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed K18159: NDUFAF1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
9 Sobic.001G517500 Ubiquitin family domain containing protein, expressed K04523: UBQLN, ubiquilin
10 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
11 Sobic.010G204400 phox domain-containing protein, putative, expressed -
12 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
13 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
14 Sobic.001G469800 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
15 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
16 Sobic.010G055800 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
17 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
18 Sobic.003G062400 PHD finger protein, putative, expressed -
19 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
20 Sobic.002G418700 expressed protein -


Gene co-expression network
sample Sobic004G068500 Sobic004G068500 Sobic007G111100 Sobic007G111100 Sobic004G068500--Sobic007G111100 Sobic002G262700 Sobic002G262700 Sobic004G068500--Sobic002G262700 Sobic001G005600 Sobic001G005600 Sobic004G068500--Sobic001G005600 Sobic002G177000 Sobic002G177000 Sobic004G068500--Sobic002G177000 Sobic007G046200 Sobic007G046200 Sobic004G068500--Sobic007G046200 Sobic001G042200 Sobic001G042200 Sobic004G068500--Sobic001G042200 Sobic007G042900 Sobic007G042900 Sobic004G068500--Sobic007G042900 Sobic003G051200 Sobic003G051200 Sobic004G068500--Sobic003G051200 Sobic001G517500 Sobic001G517500 Sobic004G068500--Sobic001G517500 Sobic010G202600 Sobic010G202600 Sobic007G111100--Sobic010G202600 Sobic007G111100--Sobic002G262700 Sobic006G267300 Sobic006G267300 Sobic007G111100--Sobic006G267300 Sobic001G143500 Sobic001G143500 Sobic007G111100--Sobic001G143500 Sobic001G390500 Sobic001G390500 Sobic007G111100--Sobic001G390500 Sobic004G283000 Sobic004G283000 Sobic007G111100--Sobic004G283000 Sobic007G111100--Sobic004G068500 Sobic001G131800 Sobic001G131800 Sobic007G111100--Sobic001G131800 Sobic003G205501 Sobic003G205501 Sobic007G111100--Sobic003G205501 Sobic002G262700--Sobic007G111100 Sobic002G262700--Sobic010G202600 Sobic009G074700 Sobic009G074700 Sobic002G262700--Sobic009G074700 Sobic007G119200 Sobic007G119200 Sobic002G262700--Sobic007G119200 Sobic002G262700--Sobic007G046200 Sobic002G262700--Sobic004G068500 Sobic008G127400 Sobic008G127400 Sobic002G262700--Sobic008G127400 Sobic007G026000 Sobic007G026000 Sobic002G262700--Sobic007G026000 Sobic010G055800 Sobic010G055800 Sobic002G262700--Sobic010G055800 Sobic009G160600 Sobic009G160600 Sobic001G005600--Sobic009G160600 Sobic010G129600 Sobic010G129600 Sobic001G005600--Sobic010G129600 Sobic001G005600--Sobic007G042900 Sobic008G140400 Sobic008G140400 Sobic001G005600--Sobic008G140400 Sobic003G150900 Sobic003G150900 Sobic001G005600--Sobic003G150900 Sobic004G323700 Sobic004G323700 Sobic001G005600--Sobic004G323700 Sobic001G005600--Sobic004G068500 Sobic008G021000 Sobic008G021000 Sobic001G005600--Sobic008G021000 Sobic001G161900 Sobic001G161900 Sobic001G005600--Sobic001G161900 Sobic002G177000--Sobic004G068500 Sobic002G177000--Sobic007G111100 Sobic010G204400 Sobic010G204400 Sobic002G177000--Sobic010G204400 Sobic004G353000 Sobic004G353000 Sobic002G177000--Sobic004G353000 Sobic006G182200 Sobic006G182200 Sobic002G177000--Sobic006G182200 Sobic009G119000 Sobic009G119000 Sobic002G177000--Sobic009G119000 Sobic003G195500 Sobic003G195500 Sobic002G177000--Sobic003G195500 Sobic006G208500 Sobic006G208500 Sobic002G177000--Sobic006G208500 Sobic001G369000 Sobic001G369000 Sobic002G177000--Sobic001G369000 Sobic007G046200--Sobic001G517500 Sobic001G473600 Sobic001G473600 Sobic007G046200--Sobic001G473600 Sobic002G034600 Sobic002G034600 Sobic007G046200--Sobic002G034600 Sobic007G046200--Sobic007G119200 Sobic007G046200--Sobic007G111100 Sobic003G355000 Sobic003G355000 Sobic007G046200--Sobic003G355000 Sobic007G046200--Sobic010G202600 Sobic001G109800 Sobic001G109800 Sobic007G046200--Sobic001G109800 Sobic003G081000 Sobic003G081000 Sobic007G046200--Sobic003G081000 Sobic010G077500 Sobic010G077500 Sobic001G042200--Sobic010G077500 Sobic004G345400 Sobic004G345400 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic008G058800 Sobic008G058800 Sobic001G042200--Sobic008G058800 Sobic007G056500 Sobic007G056500 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic001G042200--Sobic007G042900 Sobic009G249700 Sobic009G249700 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic007G042900--Sobic004G345400 Sobic007G042900--Sobic009G249700 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic007G042900--Sobic001G005600 Sobic003G248500 Sobic003G248500 Sobic003G051200--Sobic003G248500 Sobic003G051200--Sobic004G283000 Sobic003G051200--Sobic001G390500 Sobic002G378200 Sobic002G378200 Sobic003G051200--Sobic002G378200 Sobic003G051200--Sobic007G111100 Sobic002G365100 Sobic002G365100 Sobic003G051200--Sobic002G365100 Sobic002G388200 Sobic002G388200 Sobic003G051200--Sobic002G388200 Sobic001G083600 Sobic001G083600 Sobic003G051200--Sobic001G083600 Sobic001G371200 Sobic001G371200 Sobic003G051200--Sobic001G371200 Sobic001G517500--Sobic003G355000 Sobic001G517500--Sobic007G119200 Sobic001G517500--Sobic007G046200 Sobic003G397800 Sobic003G397800 Sobic001G517500--Sobic003G397800 Sobic003G073000 Sobic003G073000 Sobic001G517500--Sobic003G073000 Sobic001G517500--Sobic002G034600 Sobic002G353600 Sobic002G353600 Sobic001G517500--Sobic002G353600 Sobic004G146500 Sobic004G146500 Sobic001G517500--Sobic004G146500 Sobic001G408700 Sobic001G408700 Sobic001G517500--Sobic001G408700
Octagon: transcription factors


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