Gene annotation
Transcriptome id Sobic.001G517500.1
Synonym Sb01g048260
Functional annotation Ubiquitin family domain containing protein, expressed
UniProt C5WZW0
Pfam PF00627 PF00240
Panther DB PTHR10677 PTHR10677:SF26
NCBI CDD KOG0010; Ubiquitin-like protein
KEGG Orthology K04523; UBQLN, ubiquilin
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G17190 : ubiquitin family protein
RAP-DB (Rice) LOC_Os03g03920.1 : Ubiquitin family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053365 , Zm00025a052269 , Zm00025a003201 , Zm00025a000441
Brachypodium KQK23813 , KQK23812
Barley HORVU1Hr1G052260.12 , HORVU1Hr1G052260.13 , HORVU1Hr1G052260.10 , HORVU1Hr1G052260.11 , HORVU1Hr1G052260.14 , HORVU1Hr1G052260.15 , HORVU4Hr1G082050.7 , HORVU4Hr1G082050.6 , HORVU4Hr1G082050.5 , HORVU4Hr1G082050.4 , HORVU4Hr1G082050.3 , HORVU4Hr1G082050.2 , HORVU4Hr1G082050.1 , HORVU4Hr1G082050.9 , HORVU4Hr1G082050.8 , HORVU4Hr1G082050.15 , HORVU4Hr1G082050.14 , HORVU4Hr1G082050.13 , HORVU4Hr1G082050.12 , HORVU4Hr1G082050.11 , HORVU4Hr1G082050.10 , HORVU1Hr1G052260.8 , HORVU1Hr1G052260.1 , HORVU1Hr1G052260.2 , HORVU1Hr1G052260.3 , HORVU1Hr1G052260.4 , HORVU1Hr1G052260.5 , HORVU1Hr1G052260.6 , HORVU1Hr1G052260.7
Wheat TraesCS5A02G498100 , TraesCS5A02G498100 , TraesCS5A02G498100 , TraesCS1B02G217000 , TraesCS1B02G217000 , TraesCS1B02G217000 , TraesCS4B02G325900 , TraesCS4B02G325900 , TraesCS1D02G206500 , TraesCS1D02G206500 , TraesCS1D02G206500 , TraesCS1D02G206500 , TraesCS1A02G203000 , TraesCS1A02G203000 , TraesCS1A02G203000 , TraesCS4D02G322800 , TraesCS4D02G322800 , TraesCS4D02G322800 , TraesCS4B02G325900
Populus -


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cDNA sequences
Sobic.001G517500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
2 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
3 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
4 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
5 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
6 Sobic.002G034600 zinc ion binding protein, putative, expressed -
7 Sobic.002G353600 expressed protein -
8 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
9 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
10 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
11 Sobic.010G040800 RNA recognition motif containing protein, putative, expressed -
12 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
13 Sobic.006G175400 OsFBK22 - F-box domain and kelch repeat containing protein, expressed -
14 Sobic.003G195500 SEY1, putative, expressed -
15 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
16 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
17 Sobic.001G131800 expressed protein K15186: ELL-associated factor
18 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
19 Sobic.006G267300 expressed protein -
20 Sobic.003G205501 - -


Gene co-expression network
sample Sobic001G517500 Sobic001G517500 Sobic003G355000 Sobic003G355000 Sobic001G517500--Sobic003G355000 Sobic007G119200 Sobic007G119200 Sobic001G517500--Sobic007G119200 Sobic007G046200 Sobic007G046200 Sobic001G517500--Sobic007G046200 Sobic003G397800 Sobic003G397800 Sobic001G517500--Sobic003G397800 Sobic003G073000 Sobic003G073000 Sobic001G517500--Sobic003G073000 Sobic002G034600 Sobic002G034600 Sobic001G517500--Sobic002G034600 Sobic002G353600 Sobic002G353600 Sobic001G517500--Sobic002G353600 Sobic004G146500 Sobic004G146500 Sobic001G517500--Sobic004G146500 Sobic001G408700 Sobic001G408700 Sobic001G517500--Sobic001G408700 Sobic009G198100 Sobic009G198100 Sobic003G355000--Sobic009G198100 Sobic003G355000--Sobic002G034600 Sobic002G045400 Sobic002G045400 Sobic003G355000--Sobic002G045400 Sobic003G433500 Sobic003G433500 Sobic003G355000--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic003G355000--Sobic008G174300 Sobic003G355000--Sobic001G517500 Sobic007G118200 Sobic007G118200 Sobic003G355000--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic003G355000--Sobic010G033400 Sobic001G497900 Sobic001G497900 Sobic003G355000--Sobic001G497900 Sobic007G119200--Sobic002G034600 Sobic007G119200--Sobic004G146500 Sobic008G153000 Sobic008G153000 Sobic007G119200--Sobic008G153000 Sobic001G109800 Sobic001G109800 Sobic007G119200--Sobic001G109800 Sobic007G041500 Sobic007G041500 Sobic007G119200--Sobic007G041500 Sobic010G069100 Sobic010G069100 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic002G264200 Sobic002G264200 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic007G046200--Sobic001G517500 Sobic001G473600 Sobic001G473600 Sobic007G046200--Sobic001G473600 Sobic007G046200--Sobic002G034600 Sobic007G046200--Sobic007G119200 Sobic007G111100 Sobic007G111100 Sobic007G046200--Sobic007G111100 Sobic007G046200--Sobic003G355000 Sobic010G202600 Sobic010G202600 Sobic007G046200--Sobic010G202600 Sobic007G046200--Sobic001G109800 Sobic003G081000 Sobic003G081000 Sobic007G046200--Sobic003G081000 Sobic002G297200 Sobic002G297200 Sobic003G397800--Sobic002G297200 Sobic001G409600 Sobic001G409600 Sobic003G397800--Sobic001G409600 Sobic003G397800--Sobic002G353600 Sobic007G167500 Sobic007G167500 Sobic003G397800--Sobic007G167500 Sobic003G445400 Sobic003G445400 Sobic003G397800--Sobic003G445400 Sobic001G206100 Sobic001G206100 Sobic003G397800--Sobic001G206100 Sobic007G185900 Sobic007G185900 Sobic003G397800--Sobic007G185900 Sobic010G101800 Sobic010G101800 Sobic003G397800--Sobic010G101800 Sobic008G054500 Sobic008G054500 Sobic003G397800--Sobic008G054500 Sobic003G073000--Sobic001G206100 Sobic004G257400 Sobic004G257400 Sobic003G073000--Sobic004G257400 Sobic004G041500 Sobic004G041500 Sobic003G073000--Sobic004G041500 Sobic003G073000--Sobic007G185900 Sobic006G186400 Sobic006G186400 Sobic003G073000--Sobic006G186400 Sobic004G349900 Sobic004G349900 Sobic003G073000--Sobic004G349900 Sobic003G073000--Sobic001G408700 Sobic003G073000--Sobic001G517500 Sobic001G251700 Sobic001G251700 Sobic003G073000--Sobic001G251700 Sobic002G034600--Sobic009G198100 Sobic002G034600--Sobic007G119200 Sobic002G034600--Sobic003G081000 Sobic002G034600--Sobic001G473600 Sobic002G034600--Sobic003G355000 Sobic002G034600--Sobic007G118200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic010G236400 Sobic010G236400 Sobic002G034600--Sobic010G236400 Sobic002G353600--Sobic003G397800 Sobic007G146900 Sobic007G146900 Sobic002G353600--Sobic007G146900 Sobic002G353600--Sobic002G297200 Sobic005G207500 Sobic005G207500 Sobic002G353600--Sobic005G207500 Sobic002G353600--Sobic002G264200 Sobic003G059750 Sobic003G059750 Sobic002G353600--Sobic003G059750 Sobic002G353600--Sobic001G206100 Sobic002G353600--Sobic004G257400 Sobic002G353600--Sobic003G445400 Sobic004G146500--Sobic001G109800 Sobic004G146500--Sobic010G069100 Sobic004G146500--Sobic002G297200 Sobic004G146500--Sobic007G119200 Sobic004G274200 Sobic004G274200 Sobic004G146500--Sobic004G274200 Sobic001G220300 Sobic001G220300 Sobic004G146500--Sobic001G220300 Sobic001G155000 Sobic001G155000 Sobic004G146500--Sobic001G155000 Sobic004G146500--Sobic002G034600 Sobic008G047800 Sobic008G047800 Sobic004G146500--Sobic008G047800 Sobic003G205501 Sobic003G205501 Sobic001G408700--Sobic003G205501 Sobic004G007300 Sobic004G007300 Sobic001G408700--Sobic004G007300 Sobic004G345700 Sobic004G345700 Sobic001G408700--Sobic004G345700 Sobic001G056200 Sobic001G056200 Sobic001G408700--Sobic001G056200 Sobic001G408700--Sobic007G118200 Sobic006G267300 Sobic006G267300 Sobic001G408700--Sobic006G267300 Sobic002G197100 Sobic002G197100 Sobic001G408700--Sobic002G197100 Sobic004G283000 Sobic004G283000 Sobic001G408700--Sobic004G283000 Sobic010G245000 Sobic010G245000 Sobic001G408700--Sobic010G245000
Octagon: transcription factors


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