Gene annotation
Transcriptome id Sobic.010G040800.1
Synonym
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A194YH76
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF393
NCBI CDD KOG1457; RNA binding protein (contains RRM repeats)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G13700 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os06g05800.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a041538
Brachypodium PNT76551 , KQK19618 , KQK19619
Barley HORVU7Hr1G022410.2 , HORVU7Hr1G022410.1 , HORVU7Hr1G022410.6 , HORVU7Hr1G022410.7 , HORVU7Hr1G022410.4 , HORVU7Hr1G022410.5
Wheat TraesCS7B02G005000 , TraesCS7A02G106400 , TraesCS7D02G100500
Populus -


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cDNA sequences
Sobic.010G040800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
2 Sobic.001G517500 Ubiquitin family domain containing protein, expressed K04523: UBQLN, ubiquilin
3 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
4 Sobic.005G143400 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
5 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
6 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
7 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
8 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
9 Sobic.003G205501 - -
10 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
11 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
12 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
13 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
14 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
15 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.006G267300 expressed protein -
17 Sobic.005G059100 bromodomain domain containing protein, expressed -
18 Sobic.003G336800 expressed protein -
19 Sobic.007G026000 ATBET9, putative, expressed -
20 Sobic.008G073000 expressed protein -


Gene co-expression network
sample Sobic010G040800 Sobic010G040800 Sobic007G119200 Sobic007G119200 Sobic010G040800--Sobic007G119200 Sobic001G517500 Sobic001G517500 Sobic010G040800--Sobic001G517500 Sobic008G174300 Sobic008G174300 Sobic010G040800--Sobic008G174300 Sobic005G143400 Sobic005G143400 Sobic010G040800--Sobic005G143400 Sobic002G197100 Sobic002G197100 Sobic010G040800--Sobic002G197100 Sobic004G257400 Sobic004G257400 Sobic010G040800--Sobic004G257400 Sobic001G408700 Sobic001G408700 Sobic010G040800--Sobic001G408700 Sobic007G185900 Sobic007G185900 Sobic010G040800--Sobic007G185900 Sobic003G205501 Sobic003G205501 Sobic010G040800--Sobic003G205501 Sobic002G034600 Sobic002G034600 Sobic007G119200--Sobic002G034600 Sobic004G146500 Sobic004G146500 Sobic007G119200--Sobic004G146500 Sobic008G153000 Sobic008G153000 Sobic007G119200--Sobic008G153000 Sobic001G109800 Sobic001G109800 Sobic007G119200--Sobic001G109800 Sobic007G041500 Sobic007G041500 Sobic007G119200--Sobic007G041500 Sobic010G069100 Sobic010G069100 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic002G264200 Sobic002G264200 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic003G355000 Sobic003G355000 Sobic001G517500--Sobic003G355000 Sobic001G517500--Sobic007G119200 Sobic007G046200 Sobic007G046200 Sobic001G517500--Sobic007G046200 Sobic003G397800 Sobic003G397800 Sobic001G517500--Sobic003G397800 Sobic003G073000 Sobic003G073000 Sobic001G517500--Sobic003G073000 Sobic001G517500--Sobic002G034600 Sobic002G353600 Sobic002G353600 Sobic001G517500--Sobic002G353600 Sobic001G517500--Sobic004G146500 Sobic001G517500--Sobic001G408700 Sobic001G131800 Sobic001G131800 Sobic008G174300--Sobic001G131800 Sobic010G260500 Sobic010G260500 Sobic008G174300--Sobic010G260500 Sobic010G033400 Sobic010G033400 Sobic008G174300--Sobic010G033400 Sobic003G081000 Sobic003G081000 Sobic008G174300--Sobic003G081000 Sobic007G118200 Sobic007G118200 Sobic008G174300--Sobic007G118200 Sobic004G263900 Sobic004G263900 Sobic008G174300--Sobic004G263900 Sobic009G198100 Sobic009G198100 Sobic008G174300--Sobic009G198100 Sobic008G174300--Sobic003G355000 Sobic003G359300 Sobic003G359300 Sobic008G174300--Sobic003G359300 Sobic009G056800 Sobic009G056800 Sobic005G143400--Sobic009G056800 Sobic005G143400--Sobic007G118200 Sobic001G466700 Sobic001G466700 Sobic005G143400--Sobic001G466700 Sobic005G143400--Sobic008G174300 Sobic002G388200 Sobic002G388200 Sobic005G143400--Sobic002G388200 Sobic004G350100 Sobic004G350100 Sobic005G143400--Sobic004G350100 Sobic005G143400--Sobic007G119200 Sobic005G143400--Sobic010G040800 Sobic005G143400--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic002G197100--Sobic004G007300 Sobic006G173100 Sobic006G173100 Sobic002G197100--Sobic006G173100 Sobic004G345700 Sobic004G345700 Sobic002G197100--Sobic004G345700 Sobic001G176200 Sobic001G176200 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic001G425000 Sobic001G425000 Sobic002G197100--Sobic001G425000 Sobic003G248500 Sobic003G248500 Sobic002G197100--Sobic003G248500 Sobic001G514000 Sobic001G514000 Sobic002G197100--Sobic001G514000 Sobic002G370900 Sobic002G370900 Sobic002G197100--Sobic002G370900 Sobic002G248400 Sobic002G248400 Sobic004G257400--Sobic002G248400 Sobic003G108700 Sobic003G108700 Sobic004G257400--Sobic003G108700 Sobic008G054500 Sobic008G054500 Sobic004G257400--Sobic008G054500 Sobic003G445400 Sobic003G445400 Sobic004G257400--Sobic003G445400 Sobic007G026300 Sobic007G026300 Sobic004G257400--Sobic007G026300 Sobic004G257400--Sobic003G073000 Sobic004G257400--Sobic001G090400 Sobic007G167500 Sobic007G167500 Sobic004G257400--Sobic007G167500 Sobic001G251700 Sobic001G251700 Sobic004G257400--Sobic001G251700 Sobic001G408700--Sobic003G205501 Sobic001G408700--Sobic004G007300 Sobic001G408700--Sobic004G345700 Sobic001G056200 Sobic001G056200 Sobic001G408700--Sobic001G056200 Sobic001G408700--Sobic007G118200 Sobic006G267300 Sobic006G267300 Sobic001G408700--Sobic006G267300 Sobic001G408700--Sobic002G197100 Sobic004G283000 Sobic004G283000 Sobic001G408700--Sobic004G283000 Sobic010G245000 Sobic010G245000 Sobic001G408700--Sobic010G245000 Sobic004G196700 Sobic004G196700 Sobic007G185900--Sobic004G196700 Sobic002G157300 Sobic002G157300 Sobic007G185900--Sobic002G157300 Sobic007G078000 Sobic007G078000 Sobic007G185900--Sobic007G078000 Sobic007G185900--Sobic010G260500 Sobic002G313300 Sobic002G313300 Sobic007G185900--Sobic002G313300 Sobic007G185900--Sobic008G054500 Sobic007G185900--Sobic003G397800 Sobic005G149500 Sobic005G149500 Sobic007G185900--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic007G185900--Sobic003G187400 Sobic003G205501--Sobic001G408700 Sobic006G128800 Sobic006G128800 Sobic003G205501--Sobic006G128800 Sobic003G205501--Sobic004G345700 Sobic003G205501--Sobic006G267300 Sobic010G202600 Sobic010G202600 Sobic003G205501--Sobic010G202600 Sobic003G205501--Sobic010G245000 Sobic008G127400 Sobic008G127400 Sobic003G205501--Sobic008G127400 Sobic008G058800 Sobic008G058800 Sobic003G205501--Sobic008G058800 Sobic003G205501--Sobic003G248500
Octagon: transcription factors


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