Gene annotation
Transcriptome id Sobic.005G143400.1
Synonym NF-YC11, Nuclear Factor Y, SbNF-YC6, Sb05g020860
Functional annotation tentative name (PubMedID : 31536532)
histone-like transcription factor and archaeal histone, putative, expressed
UniProt C5Y3V7
Pfam PF00808
Panther DB PTHR10252 PTHR10252:SF40
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12480 : nuclear factor Y, subunit C11
RAP-DB (Rice) LOC_Os11g34200.1 : histone-like transcription factor and archaeal histone, putative, expressed
MaizeGDB (Corn) Zm00025a033545 , Zm00025a015720
Brachypodium KQJ88292
Barley -
Wheat TraesCS4A02G151500
Populus -


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cDNA sequences
Sobic.005G143400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
2 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
3 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
4 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
5 Sobic.002G388200 LTV1, putative, expressed K14798: protein LTV1
6 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
7 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
8 Sobic.010G040800 RNA recognition motif containing protein, putative, expressed -
9 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
10 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
11 Sobic.001G517500 Ubiquitin family domain containing protein, expressed K04523: UBQLN, ubiquilin
12 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
13 Sobic.004G153200 ZOS2-07 - C2H2 zinc finger protein, expressed -
14 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
15 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
16 Sobic.006G252700 protein kinase domain containing protein, expressed -
17 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
18 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
19 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
20 Sobic.002G034600 zinc ion binding protein, putative, expressed -


Gene co-expression network
sample Sobic005G143400 Sobic005G143400 Sobic009G056800 Sobic009G056800 Sobic005G143400--Sobic009G056800 Sobic007G118200 Sobic007G118200 Sobic005G143400--Sobic007G118200 Sobic001G466700 Sobic001G466700 Sobic005G143400--Sobic001G466700 Sobic008G174300 Sobic008G174300 Sobic005G143400--Sobic008G174300 Sobic002G388200 Sobic002G388200 Sobic005G143400--Sobic002G388200 Sobic004G350100 Sobic004G350100 Sobic005G143400--Sobic004G350100 Sobic007G119200 Sobic007G119200 Sobic005G143400--Sobic007G119200 Sobic010G040800 Sobic010G040800 Sobic005G143400--Sobic010G040800 Sobic003G081000 Sobic003G081000 Sobic005G143400--Sobic003G081000 Sobic004G021100 Sobic004G021100 Sobic009G056800--Sobic004G021100 Sobic006G173100 Sobic006G173100 Sobic009G056800--Sobic006G173100 Sobic009G056800--Sobic004G350100 Sobic009G056800--Sobic002G388200 Sobic009G056800--Sobic003G081000 Sobic001G512700 Sobic001G512700 Sobic009G056800--Sobic001G512700 Sobic002G157300 Sobic002G157300 Sobic009G056800--Sobic002G157300 Sobic009G056800--Sobic007G118200 Sobic007G104800 Sobic007G104800 Sobic009G056800--Sobic007G104800 Sobic010G033400 Sobic010G033400 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic009G198100 Sobic009G198100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic007G118200--Sobic002G034600 Sobic006G252700 Sobic006G252700 Sobic007G118200--Sobic006G252700 Sobic001G028400 Sobic001G028400 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700 Sobic001G466700--Sobic006G252700 Sobic001G466700--Sobic003G081000 Sobic001G143500 Sobic001G143500 Sobic001G466700--Sobic001G143500 Sobic001G466700--Sobic002G388200 Sobic001G371200 Sobic001G371200 Sobic001G466700--Sobic001G371200 Sobic001G466700--Sobic004G021100 Sobic001G466700--Sobic007G119200 Sobic001G466700--Sobic009G056800 Sobic001G466700--Sobic007G118200 Sobic001G131800 Sobic001G131800 Sobic008G174300--Sobic001G131800 Sobic010G260500 Sobic010G260500 Sobic008G174300--Sobic010G260500 Sobic008G174300--Sobic010G033400 Sobic008G174300--Sobic003G081000 Sobic008G174300--Sobic007G118200 Sobic004G263900 Sobic004G263900 Sobic008G174300--Sobic004G263900 Sobic008G174300--Sobic009G198100 Sobic003G355000 Sobic003G355000 Sobic008G174300--Sobic003G355000 Sobic003G359300 Sobic003G359300 Sobic008G174300--Sobic003G359300 Sobic004G283000 Sobic004G283000 Sobic002G388200--Sobic004G283000 Sobic002G388200--Sobic009G056800 Sobic002G388200--Sobic006G173100 Sobic003G187400 Sobic003G187400 Sobic002G388200--Sobic003G187400 Sobic002G388200--Sobic001G466700 Sobic002G388200--Sobic007G118200 Sobic002G388200--Sobic008G174300 Sobic008G129100 Sobic008G129100 Sobic002G388200--Sobic008G129100 Sobic002G388200--Sobic003G081000 Sobic004G350100--Sobic007G118200 Sobic004G350100--Sobic010G033400 Sobic004G350100--Sobic006G252700 Sobic004G350100--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic004G350100--Sobic004G007300 Sobic004G350100--Sobic009G056800 Sobic004G350100--Sobic004G283000 Sobic004G350100--Sobic001G143500 Sobic004G350100--Sobic001G028400 Sobic007G119200--Sobic002G034600 Sobic004G146500 Sobic004G146500 Sobic007G119200--Sobic004G146500 Sobic008G153000 Sobic008G153000 Sobic007G119200--Sobic008G153000 Sobic001G109800 Sobic001G109800 Sobic007G119200--Sobic001G109800 Sobic007G041500 Sobic007G041500 Sobic007G119200--Sobic007G041500 Sobic010G069100 Sobic010G069100 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic002G264200 Sobic002G264200 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic010G040800--Sobic007G119200 Sobic001G517500 Sobic001G517500 Sobic010G040800--Sobic001G517500 Sobic010G040800--Sobic008G174300 Sobic010G040800--Sobic005G143400 Sobic002G197100 Sobic002G197100 Sobic010G040800--Sobic002G197100 Sobic004G257400 Sobic004G257400 Sobic010G040800--Sobic004G257400 Sobic010G040800--Sobic001G408700 Sobic007G185900 Sobic007G185900 Sobic010G040800--Sobic007G185900 Sobic003G205501 Sobic003G205501 Sobic010G040800--Sobic003G205501 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic003G081000--Sobic001G466700 Sobic003G081000--Sobic004G350100
Octagon: transcription factors


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