Gene annotation
Transcriptome id Sobic.002G388200.2,Sobic.002G388200.1
Synonym Sb02g040440
Functional annotation LTV1, putative, expressed
UniProt C5X2M8
Pfam -
Panther DB PTHR21531
NCBI CDD -
KEGG Orthology K14798; protein LTV1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49990 : -
RAP-DB (Rice) LOC_Os07g44050.1 : expressed protein
MaizeGDB (Corn) Zm00025a048882
Brachypodium KQK15041
Barley -
Wheat TraesCS2D02G158700 , TraesCS2B02G178500
Populus -


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cDNA sequences
Sobic.002G388200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
2 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
3 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
4 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
5 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
6 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
7 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
8 Sobic.008G129100 expressed protein -
9 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
10 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
11 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
12 Sobic.007G009400 bromodomain domain containing protein, expressed -
13 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
14 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
15 Sobic.007G104800 expressed protein -
16 Sobic.004G007300 expressed protein -
17 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
18 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
19 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
20 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G388200 Sobic002G388200 Sobic004G283000 Sobic004G283000 Sobic002G388200--Sobic004G283000 Sobic009G056800 Sobic009G056800 Sobic002G388200--Sobic009G056800 Sobic006G173100 Sobic006G173100 Sobic002G388200--Sobic006G173100 Sobic003G187400 Sobic003G187400 Sobic002G388200--Sobic003G187400 Sobic001G466700 Sobic001G466700 Sobic002G388200--Sobic001G466700 Sobic007G118200 Sobic007G118200 Sobic002G388200--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic002G388200--Sobic008G174300 Sobic008G129100 Sobic008G129100 Sobic002G388200--Sobic008G129100 Sobic003G081000 Sobic003G081000 Sobic002G388200--Sobic003G081000 Sobic003G248500 Sobic003G248500 Sobic004G283000--Sobic003G248500 Sobic004G283000--Sobic002G388200 Sobic004G007300 Sobic004G007300 Sobic004G283000--Sobic004G007300 Sobic004G350100 Sobic004G350100 Sobic004G283000--Sobic004G350100 Sobic004G283000--Sobic008G174300 Sobic004G283000--Sobic007G118200 Sobic009G257800 Sobic009G257800 Sobic004G283000--Sobic009G257800 Sobic004G283000--Sobic006G173100 Sobic002G157300 Sobic002G157300 Sobic004G283000--Sobic002G157300 Sobic004G021100 Sobic004G021100 Sobic009G056800--Sobic004G021100 Sobic009G056800--Sobic006G173100 Sobic009G056800--Sobic004G350100 Sobic009G056800--Sobic002G388200 Sobic009G056800--Sobic003G081000 Sobic001G512700 Sobic001G512700 Sobic009G056800--Sobic001G512700 Sobic009G056800--Sobic002G157300 Sobic009G056800--Sobic007G118200 Sobic007G104800 Sobic007G104800 Sobic009G056800--Sobic007G104800 Sobic001G090400 Sobic001G090400 Sobic006G173100--Sobic001G090400 Sobic006G173100--Sobic002G157300 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic002G370900 Sobic002G370900 Sobic006G173100--Sobic002G370900 Sobic003G187400--Sobic002G157300 Sobic005G149500 Sobic005G149500 Sobic003G187400--Sobic005G149500 Sobic009G040700 Sobic009G040700 Sobic003G187400--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G187400--Sobic001G094000 Sobic003G187400--Sobic006G173100 Sobic006G060100 Sobic006G060100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic004G196700 Sobic004G196700 Sobic003G187400--Sobic004G196700 Sobic003G187400--Sobic007G104800 Sobic006G252700 Sobic006G252700 Sobic001G466700--Sobic006G252700 Sobic001G466700--Sobic003G081000 Sobic001G143500 Sobic001G143500 Sobic001G466700--Sobic001G143500 Sobic001G466700--Sobic002G388200 Sobic001G371200 Sobic001G371200 Sobic001G466700--Sobic001G371200 Sobic001G466700--Sobic004G021100 Sobic007G119200 Sobic007G119200 Sobic001G466700--Sobic007G119200 Sobic001G466700--Sobic009G056800 Sobic001G466700--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic009G198100 Sobic009G198100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic007G118200--Sobic002G034600 Sobic007G118200--Sobic006G252700 Sobic001G028400 Sobic001G028400 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700 Sobic001G131800 Sobic001G131800 Sobic008G174300--Sobic001G131800 Sobic010G260500 Sobic010G260500 Sobic008G174300--Sobic010G260500 Sobic008G174300--Sobic010G033400 Sobic008G174300--Sobic003G081000 Sobic008G174300--Sobic007G118200 Sobic004G263900 Sobic004G263900 Sobic008G174300--Sobic004G263900 Sobic008G174300--Sobic009G198100 Sobic003G355000 Sobic003G355000 Sobic008G174300--Sobic003G355000 Sobic003G359300 Sobic003G359300 Sobic008G174300--Sobic003G359300 Sobic008G129100--Sobic004G007300 Sobic008G129100--Sobic002G388200 Sobic008G129100--Sobic004G283000 Sobic008G129100--Sobic006G173100 Sobic008G129100--Sobic003G248500 Sobic003G008500 Sobic003G008500 Sobic008G129100--Sobic003G008500 Sobic008G129100--Sobic002G197100 Sobic006G082900 Sobic006G082900 Sobic008G129100--Sobic006G082900 Sobic003G051200 Sobic003G051200 Sobic008G129100--Sobic003G051200 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic003G081000--Sobic001G466700 Sobic003G081000--Sobic004G350100
Octagon: transcription factors


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