Gene annotation
Transcriptome id Sobic.001G005600.1
Synonym SNF4, ATSNF4, Sb01g000600
Functional annotation CBS domain containing membrane protein, putative, expressed
UniProt C5WRX9
Pfam PF00571 PF16561
Panther DB PTHR13780 PTHR13780:SF54
NCBI CDD KOG1764; 5'-AMP-activated protein kinase, gamma subunit
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09020 : homolog of yeast sucrose nonfermenting 4
RAP-DB (Rice) LOC_Os03g63940.1 : CBS domain containing membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a009108 , Zm00025a016295
Brachypodium KQK12010
Barley HORVU5Hr1G124410.5 , HORVU5Hr1G124410.6 , HORVU5Hr1G124410.11 , HORVU5Hr1G124410.10 , HORVU5Hr1G124410.13 , HORVU5Hr1G124410.12 , HORVU5Hr1G124410.9 , HORVU5Hr1G124410.8 , HORVU5Hr1G124410.4 , HORVU5Hr1G124410.7 , HORVU5Hr1G124410.2
Wheat TraesCS5B02G559100 , TraesCS5B02G559100 , TraesCS5D02G565200 , TraesCS5D02G565200 , TraesCS5D02G565200 , TraesCS4A02G320000 , TraesCS4A02G320000
Populus -


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cDNA sequences
Sobic.001G005600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G160600 Yip1 domain containing protein, expressed -
2 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
3 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
4 Sobic.008G140400 diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
5 Sobic.003G150900 protein transport protein-related, putative, expressed -
6 Sobic.004G323700 zinc finger family protein, putative, expressed -
7 Sobic.004G068500 CUE domain containing protein, expressed -
8 Sobic.008G021000 exostosin family domain containing protein, expressed -
9 Sobic.001G161900 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
10 Sobic.004G091200 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
11 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
12 Sobic.006G139100 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
13 Sobic.002G314900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
15 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
16 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
17 Sobic.003G212900 zinc ion binding protein, putative, expressed -
18 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
19 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
20 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -


Gene co-expression network
sample Sobic001G005600 Sobic001G005600 Sobic009G160600 Sobic009G160600 Sobic001G005600--Sobic009G160600 Sobic010G129600 Sobic010G129600 Sobic001G005600--Sobic010G129600 Sobic007G042900 Sobic007G042900 Sobic001G005600--Sobic007G042900 Sobic008G140400 Sobic008G140400 Sobic001G005600--Sobic008G140400 Sobic003G150900 Sobic003G150900 Sobic001G005600--Sobic003G150900 Sobic004G323700 Sobic004G323700 Sobic001G005600--Sobic004G323700 Sobic004G068500 Sobic004G068500 Sobic001G005600--Sobic004G068500 Sobic008G021000 Sobic008G021000 Sobic001G005600--Sobic008G021000 Sobic001G161900 Sobic001G161900 Sobic001G005600--Sobic001G161900 Sobic009G160600--Sobic001G005600 Sobic009G160600--Sobic001G161900 Sobic003G382900 Sobic003G382900 Sobic009G160600--Sobic003G382900 Sobic009G160600--Sobic004G323700 Sobic003G005200 Sobic003G005200 Sobic009G160600--Sobic003G005200 Sobic009G160600--Sobic003G150900 Sobic009G160600--Sobic010G129600 Sobic007G056500 Sobic007G056500 Sobic009G160600--Sobic007G056500 Sobic001G042200 Sobic001G042200 Sobic009G160600--Sobic001G042200 Sobic010G129600--Sobic001G005600 Sobic010G129600--Sobic001G161900 Sobic001G313500 Sobic001G313500 Sobic010G129600--Sobic001G313500 Sobic006G271200 Sobic006G271200 Sobic010G129600--Sobic006G271200 Sobic004G091200 Sobic004G091200 Sobic010G129600--Sobic004G091200 Sobic010G261600 Sobic010G261600 Sobic010G129600--Sobic010G261600 Sobic010G129600--Sobic009G160600 Sobic006G237900 Sobic006G237900 Sobic010G129600--Sobic006G237900 Sobic008G061100 Sobic008G061100 Sobic010G129600--Sobic008G061100 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic009G249700 Sobic009G249700 Sobic007G042900--Sobic009G249700 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic007G042900--Sobic001G005600 Sobic008G140400--Sobic001G005600 Sobic007G173700 Sobic007G173700 Sobic008G140400--Sobic007G173700 Sobic006G222500 Sobic006G222500 Sobic008G140400--Sobic006G222500 Sobic001G122000 Sobic001G122000 Sobic008G140400--Sobic001G122000 Sobic001G023100 Sobic001G023100 Sobic008G140400--Sobic001G023100 Sobic002G419000 Sobic002G419000 Sobic008G140400--Sobic002G419000 Sobic002G357900 Sobic002G357900 Sobic008G140400--Sobic002G357900 Sobic001G193100 Sobic001G193100 Sobic008G140400--Sobic001G193100 Sobic003G199500 Sobic003G199500 Sobic008G140400--Sobic003G199500 Sobic005G114800 Sobic005G114800 Sobic003G150900--Sobic005G114800 Sobic009G166600 Sobic009G166600 Sobic003G150900--Sobic009G166600 Sobic003G150900--Sobic001G005600 Sobic003G150900--Sobic006G139100 Sobic003G150900--Sobic001G042200 Sobic007G146600 Sobic007G146600 Sobic003G150900--Sobic007G146600 Sobic003G150900--Sobic008G021000 Sobic010G077500 Sobic010G077500 Sobic003G150900--Sobic010G077500 Sobic003G150900--Sobic009G160600 Sobic002G117400 Sobic002G117400 Sobic004G323700--Sobic002G117400 Sobic007G218000 Sobic007G218000 Sobic004G323700--Sobic007G218000 Sobic002G303600 Sobic002G303600 Sobic004G323700--Sobic002G303600 Sobic004G323700--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic004G323700--Sobic004G228800 Sobic010G278200 Sobic010G278200 Sobic004G323700--Sobic010G278200 Sobic006G174850 Sobic006G174850 Sobic004G323700--Sobic006G174850 Sobic006G131000 Sobic006G131000 Sobic004G323700--Sobic006G131000 Sobic004G039600 Sobic004G039600 Sobic004G323700--Sobic004G039600 Sobic007G111100 Sobic007G111100 Sobic004G068500--Sobic007G111100 Sobic002G262700 Sobic002G262700 Sobic004G068500--Sobic002G262700 Sobic004G068500--Sobic001G005600 Sobic002G177000 Sobic002G177000 Sobic004G068500--Sobic002G177000 Sobic007G046200 Sobic007G046200 Sobic004G068500--Sobic007G046200 Sobic004G068500--Sobic001G042200 Sobic004G068500--Sobic007G042900 Sobic003G051200 Sobic003G051200 Sobic004G068500--Sobic003G051200 Sobic001G517500 Sobic001G517500 Sobic004G068500--Sobic001G517500 Sobic008G021000--Sobic009G166600 Sobic006G224300 Sobic006G224300 Sobic008G021000--Sobic006G224300 Sobic008G021000--Sobic001G005600 Sobic003G212900 Sobic003G212900 Sobic008G021000--Sobic003G212900 Sobic002G313900 Sobic002G313900 Sobic008G021000--Sobic002G313900 Sobic006G203300 Sobic006G203300 Sobic008G021000--Sobic006G203300 Sobic001G135500 Sobic001G135500 Sobic008G021000--Sobic001G135500 Sobic008G021000--Sobic003G150900 Sobic006G224800 Sobic006G224800 Sobic008G021000--Sobic006G224800 Sobic001G161900--Sobic009G160600 Sobic001G161900--Sobic010G129600 Sobic001G421400 Sobic001G421400 Sobic001G161900--Sobic001G421400 Sobic001G161900--Sobic001G005600 Sobic001G161900--Sobic010G261600 Sobic001G161900--Sobic001G313500 Sobic003G053800 Sobic003G053800 Sobic001G161900--Sobic003G053800 Sobic010G243400 Sobic010G243400 Sobic001G161900--Sobic010G243400 Sobic001G512400 Sobic001G512400 Sobic001G161900--Sobic001G512400
Octagon: transcription factors


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