Gene annotation
Transcriptome id Sobic.009G160600.1
Synonym Sb09g022330
Functional annotation Yip1 domain containing protein, expressed
UniProt C5YZ73
Pfam PF04893
Panther DB PTHR12822 PTHR12822:SF5
NCBI CDD KOG3114; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT2G39805 : Integral membrane Yip1 family protein
RAP-DB (Rice) LOC_Os05g38180.4 : Yip1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043888
Brachypodium KQK05938 , KQK05939 , KQK05936 , KQK05937
Barley HORVU1Hr1G072650.7 , HORVU1Hr1G072650.6 , HORVU1Hr1G072650.5 , HORVU1Hr1G072650.4 , HORVU1Hr1G072650.3 , HORVU1Hr1G072650.2 , HORVU1Hr1G072650.1 , HORVU1Hr1G072650.8
Wheat TraesCS1B02G290900 , TraesCS1D02G281000 , TraesCS1D02G281000 , TraesCS1B02G290900 , TraesCS1A02G281800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G160600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
2 Sobic.001G161900 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
3 Sobic.003G382900 signal recognition particle 72 kDa protein, putative, expressed K03108: signal recognition particle subunit SRP72
4 Sobic.004G323700 zinc finger family protein, putative, expressed -
5 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
6 Sobic.003G150900 protein transport protein-related, putative, expressed -
7 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
8 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
9 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
10 Sobic.001G421400 expressed protein -
11 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
12 Sobic.010G243400 expressed protein -
13 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
14 Sobic.006G225300 expressed protein -
15 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
16 Sobic.001G313500 tobamovirus multiplication protein, putative, expressed -
17 Sobic.007G189000 WTG1(Ortholog in rice:Wang et al. (2017))(PubMedID : 31659909)@ubiquitin thioesterase otubain-like, putative, expressed K09602: ubiquitin thioesterase protein OTUB1
18 Sobic.003G053800 WD40-like domain containing protein, putative, expressed -
19 Sobic.008G192000 yippee zinc-binding protein, putative, expressed -
20 Sobic.003G199500 integral membrane protein, putative, expressed -


Gene co-expression network
sample Sobic009G160600 Sobic009G160600 Sobic001G005600 Sobic001G005600 Sobic009G160600--Sobic001G005600 Sobic001G161900 Sobic001G161900 Sobic009G160600--Sobic001G161900 Sobic003G382900 Sobic003G382900 Sobic009G160600--Sobic003G382900 Sobic004G323700 Sobic004G323700 Sobic009G160600--Sobic004G323700 Sobic003G005200 Sobic003G005200 Sobic009G160600--Sobic003G005200 Sobic003G150900 Sobic003G150900 Sobic009G160600--Sobic003G150900 Sobic010G129600 Sobic010G129600 Sobic009G160600--Sobic010G129600 Sobic007G056500 Sobic007G056500 Sobic009G160600--Sobic007G056500 Sobic001G042200 Sobic001G042200 Sobic009G160600--Sobic001G042200 Sobic001G005600--Sobic009G160600 Sobic001G005600--Sobic010G129600 Sobic007G042900 Sobic007G042900 Sobic001G005600--Sobic007G042900 Sobic008G140400 Sobic008G140400 Sobic001G005600--Sobic008G140400 Sobic001G005600--Sobic003G150900 Sobic001G005600--Sobic004G323700 Sobic004G068500 Sobic004G068500 Sobic001G005600--Sobic004G068500 Sobic008G021000 Sobic008G021000 Sobic001G005600--Sobic008G021000 Sobic001G005600--Sobic001G161900 Sobic001G161900--Sobic009G160600 Sobic001G161900--Sobic010G129600 Sobic001G421400 Sobic001G421400 Sobic001G161900--Sobic001G421400 Sobic001G161900--Sobic001G005600 Sobic010G261600 Sobic010G261600 Sobic001G161900--Sobic010G261600 Sobic001G313500 Sobic001G313500 Sobic001G161900--Sobic001G313500 Sobic003G053800 Sobic003G053800 Sobic001G161900--Sobic003G053800 Sobic010G243400 Sobic010G243400 Sobic001G161900--Sobic010G243400 Sobic001G512400 Sobic001G512400 Sobic001G161900--Sobic001G512400 Sobic003G382900--Sobic009G160600 Sobic003G382900--Sobic001G421400 Sobic010G238700 Sobic010G238700 Sobic003G382900--Sobic010G238700 Sobic006G225300 Sobic006G225300 Sobic003G382900--Sobic006G225300 Sobic002G090700 Sobic002G090700 Sobic003G382900--Sobic002G090700 Sobic003G148900 Sobic003G148900 Sobic003G382900--Sobic003G148900 Sobic003G382900--Sobic001G161900 Sobic006G222400 Sobic006G222400 Sobic003G382900--Sobic006G222400 Sobic003G038600 Sobic003G038600 Sobic003G382900--Sobic003G038600 Sobic002G117400 Sobic002G117400 Sobic004G323700--Sobic002G117400 Sobic007G218000 Sobic007G218000 Sobic004G323700--Sobic007G218000 Sobic002G303600 Sobic002G303600 Sobic004G323700--Sobic002G303600 Sobic004G323700--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic004G323700--Sobic004G228800 Sobic010G278200 Sobic010G278200 Sobic004G323700--Sobic010G278200 Sobic006G174850 Sobic006G174850 Sobic004G323700--Sobic006G174850 Sobic006G131000 Sobic006G131000 Sobic004G323700--Sobic006G131000 Sobic004G039600 Sobic004G039600 Sobic004G323700--Sobic004G039600 Sobic002G300700 Sobic002G300700 Sobic003G005200--Sobic002G300700 Sobic003G005200--Sobic009G160600 Sobic001G360200 Sobic001G360200 Sobic003G005200--Sobic001G360200 Sobic003G005200--Sobic006G225300 Sobic002G281300 Sobic002G281300 Sobic003G005200--Sobic002G281300 Sobic004G091200 Sobic004G091200 Sobic003G005200--Sobic004G091200 Sobic003G005200--Sobic003G038600 Sobic003G021200 Sobic003G021200 Sobic003G005200--Sobic003G021200 Sobic009G058500 Sobic009G058500 Sobic003G005200--Sobic009G058500 Sobic005G114800 Sobic005G114800 Sobic003G150900--Sobic005G114800 Sobic009G166600 Sobic009G166600 Sobic003G150900--Sobic009G166600 Sobic003G150900--Sobic001G005600 Sobic006G139100 Sobic006G139100 Sobic003G150900--Sobic006G139100 Sobic003G150900--Sobic001G042200 Sobic007G146600 Sobic007G146600 Sobic003G150900--Sobic007G146600 Sobic003G150900--Sobic008G021000 Sobic010G077500 Sobic010G077500 Sobic003G150900--Sobic010G077500 Sobic003G150900--Sobic009G160600 Sobic010G129600--Sobic001G005600 Sobic010G129600--Sobic001G161900 Sobic010G129600--Sobic001G313500 Sobic006G271200 Sobic006G271200 Sobic010G129600--Sobic006G271200 Sobic010G129600--Sobic004G091200 Sobic010G129600--Sobic010G261600 Sobic010G129600--Sobic009G160600 Sobic006G237900 Sobic006G237900 Sobic010G129600--Sobic006G237900 Sobic008G061100 Sobic008G061100 Sobic010G129600--Sobic008G061100 Sobic006G186400 Sobic006G186400 Sobic007G056500--Sobic006G186400 Sobic002G034600 Sobic002G034600 Sobic007G056500--Sobic002G034600 Sobic007G056500--Sobic001G042200 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic004G180900 Sobic004G180900 Sobic007G056500--Sobic004G180900 Sobic001G395100 Sobic001G395100 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic006G121300 Sobic006G121300 Sobic007G056500--Sobic006G121300 Sobic001G042200--Sobic010G077500 Sobic004G345400 Sobic004G345400 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic008G058800 Sobic008G058800 Sobic001G042200--Sobic008G058800 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic001G042200--Sobic007G042900 Sobic009G249700 Sobic009G249700 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.