Gene annotation
Transcriptome id Sobic.003G150900.1
Synonym Sb03g013100
Functional annotation protein transport protein-related, putative, expressed
UniProt C5XIW9
Pfam PF00626 PF04810 PF04815 PF08033 PF04811
Panther DB PTHR11141 PTHR11141:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT4G01810 : Sec23/Sec24 protein transport family protein
RAP-DB (Rice) LOC_Os01g21850.1 : protein transport protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a036142
Brachypodium KQK04173 , KQK04172
Barley HORVU3Hr1G044780.2 , HORVU3Hr1G044780.1 , HORVU3Hr1G044760.1 , HORVU3Hr1G044760.2 , HORVU3Hr1G044760.3 , HORVU3Hr1G044760.4
Wheat TraesCS3A02G195200 , TraesCS3A02G195200 , TraesCS3B02G222900 , TraesCS3D02G198500
Populus -


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cDNA sequences
Sobic.003G150900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G114800 protein transport protein, putative, expressed K14007: protein transport protein SEC24
2 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
3 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
4 Sobic.006G139100 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
5 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
6 Sobic.007G146600 conserved oligomeric Golgi complex component 3, putative, expressed -
7 Sobic.008G021000 exostosin family domain containing protein, expressed -
8 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
9 Sobic.009G160600 Yip1 domain containing protein, expressed -
10 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
11 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
12 Sobic.006G282200 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed K12666: OST1, oligosaccharyltransferase complex subunit alpha (ribophorin I)
13 Sobic.002G313900 potassium transporter, putative, expressed -
14 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
15 Sobic.005G110499 - K14006: protein transport protein SEC23
16 Sobic.001G393700 expressed protein -
17 Sobic.001G103300 calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed K05853: P-type Ca2+ transporter type 2A
18 Sobic.005G133800 NEF1, putative, expressed -
19 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
20 Sobic.006G210700 potassium transporter, putative, expressed -


Gene co-expression network
sample Sobic003G150900 Sobic003G150900 Sobic005G114800 Sobic005G114800 Sobic003G150900--Sobic005G114800 Sobic009G166600 Sobic009G166600 Sobic003G150900--Sobic009G166600 Sobic001G005600 Sobic001G005600 Sobic003G150900--Sobic001G005600 Sobic006G139100 Sobic006G139100 Sobic003G150900--Sobic006G139100 Sobic001G042200 Sobic001G042200 Sobic003G150900--Sobic001G042200 Sobic007G146600 Sobic007G146600 Sobic003G150900--Sobic007G146600 Sobic008G021000 Sobic008G021000 Sobic003G150900--Sobic008G021000 Sobic010G077500 Sobic010G077500 Sobic003G150900--Sobic010G077500 Sobic009G160600 Sobic009G160600 Sobic003G150900--Sobic009G160600 Sobic005G114800--Sobic003G150900 Sobic005G114800--Sobic009G166600 Sobic005G110499 Sobic005G110499 Sobic005G114800--Sobic005G110499 Sobic001G393700 Sobic001G393700 Sobic005G114800--Sobic001G393700 Sobic001G474400 Sobic001G474400 Sobic005G114800--Sobic001G474400 Sobic001G103300 Sobic001G103300 Sobic005G114800--Sobic001G103300 Sobic003G394200 Sobic003G394200 Sobic005G114800--Sobic003G394200 Sobic001G445500 Sobic001G445500 Sobic005G114800--Sobic001G445500 Sobic006G224800 Sobic006G224800 Sobic005G114800--Sobic006G224800 Sobic002G313900 Sobic002G313900 Sobic009G166600--Sobic002G313900 Sobic009G166600--Sobic005G114800 Sobic006G210700 Sobic006G210700 Sobic009G166600--Sobic006G210700 Sobic005G197100 Sobic005G197100 Sobic009G166600--Sobic005G197100 Sobic009G249700 Sobic009G249700 Sobic009G166600--Sobic009G249700 Sobic009G166600--Sobic008G021000 Sobic009G166600--Sobic003G394200 Sobic002G292900 Sobic002G292900 Sobic009G166600--Sobic002G292900 Sobic006G128100 Sobic006G128100 Sobic009G166600--Sobic006G128100 Sobic001G005600--Sobic009G160600 Sobic010G129600 Sobic010G129600 Sobic001G005600--Sobic010G129600 Sobic007G042900 Sobic007G042900 Sobic001G005600--Sobic007G042900 Sobic008G140400 Sobic008G140400 Sobic001G005600--Sobic008G140400 Sobic001G005600--Sobic003G150900 Sobic004G323700 Sobic004G323700 Sobic001G005600--Sobic004G323700 Sobic004G068500 Sobic004G068500 Sobic001G005600--Sobic004G068500 Sobic001G005600--Sobic008G021000 Sobic001G161900 Sobic001G161900 Sobic001G005600--Sobic001G161900 Sobic004G145000 Sobic004G145000 Sobic006G139100--Sobic004G145000 Sobic006G139100--Sobic002G313900 Sobic006G139100--Sobic007G042900 Sobic006G139100--Sobic003G150900 Sobic003G227100 Sobic003G227100 Sobic006G139100--Sobic003G227100 Sobic006G139100--Sobic001G005600 Sobic003G050900 Sobic003G050900 Sobic006G139100--Sobic003G050900 Sobic002G150700 Sobic002G150700 Sobic006G139100--Sobic002G150700 Sobic003G046300 Sobic003G046300 Sobic006G139100--Sobic003G046300 Sobic001G042200--Sobic010G077500 Sobic004G345400 Sobic004G345400 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic008G058800 Sobic008G058800 Sobic001G042200--Sobic008G058800 Sobic007G056500 Sobic007G056500 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic001G042200--Sobic007G042900 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic007G148400 Sobic007G148400 Sobic007G146600--Sobic007G148400 Sobic001G343000 Sobic001G343000 Sobic007G146600--Sobic001G343000 Sobic006G222500 Sobic006G222500 Sobic007G146600--Sobic006G222500 Sobic009G063800 Sobic009G063800 Sobic007G146600--Sobic009G063800 Sobic002G182000 Sobic002G182000 Sobic007G146600--Sobic002G182000 Sobic007G146600--Sobic003G150900 Sobic003G393200 Sobic003G393200 Sobic007G146600--Sobic003G393200 Sobic007G146600--Sobic005G114800 Sobic010G250000 Sobic010G250000 Sobic007G146600--Sobic010G250000 Sobic008G021000--Sobic009G166600 Sobic006G224300 Sobic006G224300 Sobic008G021000--Sobic006G224300 Sobic008G021000--Sobic001G005600 Sobic008G021000--Sobic003G212900 Sobic008G021000--Sobic002G313900 Sobic006G203300 Sobic006G203300 Sobic008G021000--Sobic006G203300 Sobic001G135500 Sobic001G135500 Sobic008G021000--Sobic001G135500 Sobic008G021000--Sobic003G150900 Sobic008G021000--Sobic006G224800 Sobic010G077500--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic010G077500--Sobic006G049100 Sobic010G077500--Sobic004G345400 Sobic010G077500--Sobic007G187600 Sobic010G077500--Sobic003G212900 Sobic010G077500--Sobic008G058800 Sobic010G077500--Sobic007G056500 Sobic002G063900 Sobic002G063900 Sobic010G077500--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic010G077500--Sobic009G129600 Sobic009G160600--Sobic001G005600 Sobic009G160600--Sobic001G161900 Sobic003G382900 Sobic003G382900 Sobic009G160600--Sobic003G382900 Sobic009G160600--Sobic004G323700 Sobic003G005200 Sobic003G005200 Sobic009G160600--Sobic003G005200 Sobic009G160600--Sobic003G150900 Sobic009G160600--Sobic010G129600 Sobic009G160600--Sobic007G056500 Sobic009G160600--Sobic001G042200
Octagon: transcription factors


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