Gene annotation
Transcriptome id Sobic.005G110499.1
Synonym -
Functional annotation -
UniProt C6JRL5
Pfam PF00626 PF04810 PF04815 PF08033 PF04811
Panther DB PTHR11141
NCBI CDD -
KEGG Orthology K14006; protein transport protein SEC23
Gene Ontology GO:0008270; zinc ion binding GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT3G23660 : Sec23/Sec24 protein transport family protein
RAP-DB (Rice) LOC_Os11g24560.1 : protein transport protein, putative, expressed
MaizeGDB (Corn) Zm00025a012609 , Zm00025a029699 , Zm00025a012614
Brachypodium KQJ88565 , KQJ88566
Barley HORVU4Hr1G041690.4 , HORVU4Hr1G041690.5 , HORVU4Hr1G041690.6 , HORVU4Hr1G041690.7 , HORVU4Hr1G041690.1 , HORVU4Hr1G041690.2 , HORVU4Hr1G041690.3 , HORVU4Hr1G041690.9
Wheat TraesCS4A02G151800 , TraesCS4A02G151800 , TraesCS4A02G151800 , TraesCS4A02G151800 , TraesCS4A02G151800 , TraesCS4D02G151400 , TraesCS4D02G151400 , TraesCS4B02G163100 , TraesCS4B02G163100 , TraesCS4B02G163100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
2 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
3 Sobic.001G308400 expressed protein -
4 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
5 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
6 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
7 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
8 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
9 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
10 Sobic.008G085700 exocyst complex component 5, putative, expressed -
11 Sobic.003G023300 Alg9-like mannosyltransferase protein, putative, expressed K03846: alpha-1,2-mannosyltransferase
12 Sobic.010G000800 PHD-finger domain containing protein, expressed -
13 Sobic.005G114800 protein transport protein, putative, expressed K14007: protein transport protein SEC24
14 Sobic.006G224800 expressed protein -
15 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
16 Sobic.003G050900 dolichyl-P-Man Man-PP-dolichyl mannosyltransferase, putative, expressed K03845: alpha-1,3-mannosyltransferase
17 Sobic.003G227100 adaptin, putative, expressed -
18 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
19 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
20 Sobic.005G133800 NEF1, putative, expressed -


Gene co-expression network
sample Sobic005G110499 Sobic005G110499 Sobic003G189600 Sobic003G189600 Sobic005G110499--Sobic003G189600 Sobic001G474400 Sobic001G474400 Sobic005G110499--Sobic001G474400 Sobic001G308400 Sobic001G308400 Sobic005G110499--Sobic001G308400 Sobic003G394200 Sobic003G394200 Sobic005G110499--Sobic003G394200 Sobic004G053500 Sobic004G053500 Sobic005G110499--Sobic004G053500 Sobic002G401500 Sobic002G401500 Sobic005G110499--Sobic002G401500 Sobic006G021700 Sobic006G021700 Sobic005G110499--Sobic006G021700 Sobic002G371700 Sobic002G371700 Sobic005G110499--Sobic002G371700 Sobic003G209200 Sobic003G209200 Sobic005G110499--Sobic003G209200 Sobic003G189600--Sobic005G110499 Sobic010G185400 Sobic010G185400 Sobic003G189600--Sobic010G185400 Sobic007G218000 Sobic007G218000 Sobic003G189600--Sobic007G218000 Sobic006G077200 Sobic006G077200 Sobic003G189600--Sobic006G077200 Sobic003G189600--Sobic003G394200 Sobic006G224800 Sobic006G224800 Sobic003G189600--Sobic006G224800 Sobic009G249700 Sobic009G249700 Sobic003G189600--Sobic009G249700 Sobic003G189600--Sobic001G308400 Sobic004G322400 Sobic004G322400 Sobic003G189600--Sobic004G322400 Sobic001G474400--Sobic005G110499 Sobic003G397900 Sobic003G397900 Sobic001G474400--Sobic003G397900 Sobic007G145400 Sobic007G145400 Sobic001G474400--Sobic007G145400 Sobic001G097900 Sobic001G097900 Sobic001G474400--Sobic001G097900 Sobic005G114500 Sobic005G114500 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic010G223400 Sobic010G223400 Sobic001G474400--Sobic010G223400 Sobic001G467100 Sobic001G467100 Sobic001G474400--Sobic001G467100 Sobic006G265600 Sobic006G265600 Sobic001G474400--Sobic006G265600 Sobic004G265500 Sobic004G265500 Sobic001G308400--Sobic004G265500 Sobic002G227500 Sobic002G227500 Sobic001G308400--Sobic002G227500 SobicK028600 SobicK028600 Sobic001G308400--SobicK028600 Sobic003G043000 Sobic003G043000 Sobic001G308400--Sobic003G043000 Sobic010G169900 Sobic010G169900 Sobic001G308400--Sobic010G169900 Sobic006G128100 Sobic006G128100 Sobic001G308400--Sobic006G128100 Sobic004G357100 Sobic004G357100 Sobic001G308400--Sobic004G357100 Sobic001G156900 Sobic001G156900 Sobic001G308400--Sobic001G156900 Sobic001G308400--Sobic003G394200 Sobic004G084500 Sobic004G084500 Sobic003G394200--Sobic004G084500 Sobic006G203300 Sobic006G203300 Sobic003G394200--Sobic006G203300 Sobic003G394200--Sobic006G128100 Sobic003G394200--Sobic010G223400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G270600 Sobic003G270600 Sobic003G394200--Sobic003G270600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000 Sobic004G053500--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic004G053500--Sobic002G179400 Sobic002G335600 Sobic002G335600 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic003G296900 Sobic003G296900 Sobic004G053500--Sobic003G296900 Sobic005G162500 Sobic005G162500 Sobic004G053500--Sobic005G162500 Sobic002G401500--Sobic004G322400 Sobic009G131300 Sobic009G131300 Sobic002G401500--Sobic009G131300 Sobic002G042600 Sobic002G042600 Sobic002G401500--Sobic002G042600 Sobic002G401500--Sobic004G053500 Sobic005G062200 Sobic005G062200 Sobic002G401500--Sobic005G062200 Sobic002G429300 Sobic002G429300 Sobic002G401500--Sobic002G429300 Sobic001G065100 Sobic001G065100 Sobic002G401500--Sobic001G065100 Sobic008G088872 Sobic008G088872 Sobic002G401500--Sobic008G088872 Sobic001G263600 Sobic001G263600 Sobic002G401500--Sobic001G263600 Sobic008G124800 Sobic008G124800 Sobic006G021700--Sobic008G124800 Sobic006G077300 Sobic006G077300 Sobic006G021700--Sobic006G077300 Sobic006G021700--Sobic002G340900 Sobic005G059500 Sobic005G059500 Sobic006G021700--Sobic005G059500 Sobic006G021700--Sobic003G209200 Sobic003G346400 Sobic003G346400 Sobic006G021700--Sobic003G346400 Sobic010G000800 Sobic010G000800 Sobic006G021700--Sobic010G000800 Sobic007G005500 Sobic007G005500 Sobic006G021700--Sobic007G005500 Sobic006G021700--Sobic005G110499 Sobic008G103300 Sobic008G103300 Sobic002G371700--Sobic008G103300 Sobic002G371700--Sobic004G053500 Sobic010G059500 Sobic010G059500 Sobic002G371700--Sobic010G059500 Sobic002G142900 Sobic002G142900 Sobic002G371700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G371700--Sobic004G131300 Sobic002G371700--Sobic002G401500 Sobic002G371700--Sobic005G110499 Sobic001G087600 Sobic001G087600 Sobic002G371700--Sobic001G087600 Sobic003G363700 Sobic003G363700 Sobic002G371700--Sobic003G363700 Sobic003G209200--Sobic007G005500 Sobic006G260500 Sobic006G260500 Sobic003G209200--Sobic006G260500 Sobic003G209200--Sobic006G077300 Sobic003G209200--Sobic006G021700 Sobic003G209200--Sobic005G062200 Sobic004G241900 Sobic004G241900 Sobic003G209200--Sobic004G241900 Sobic004G261600 Sobic004G261600 Sobic003G209200--Sobic004G261600 Sobic003G209200--Sobic005G110499 Sobic009G077600 Sobic009G077600 Sobic003G209200--Sobic009G077600
Octagon: transcription factors


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