Gene annotation
Transcriptome id Sobic.003G227100.1
Synonym Sb03g028500
Functional annotation adaptin, putative, expressed
UniProt C5XED0
Pfam PF12717 PF09066
Panther DB PTHR11134 PTHR11134:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT5G11490 : adaptin family protein
RAP-DB (Rice) LOC_Os01g43630.2 : adaptin, putative, expressed
MaizeGDB (Corn) Zm00025a028343 , Zm00025a038600
Brachypodium KQK08816
Barley HORVU3Hr1G055990.5 , HORVU3Hr1G055990.4 , HORVU3Hr1G055990.6 , HORVU3Hr1G055990.1 , HORVU3Hr1G055990.3 , HORVU3Hr1G055990.2
Wheat TraesCS3A02G228800 , TraesCS3A02G228800 , TraesCS3A02G228800 , TraesCS3D02G226500 , TraesCS3D02G226500 , TraesCS3B02G255800 , TraesCS3B02G255800 , TraesCS3B02G255800 , TraesCS3B02G255800
Populus -


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cDNA sequences
Sobic.003G227100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G224800 expressed protein -
2 Sobic.005G110499 - K14006: protein transport protein SEC23
3 Sobic.003G240700 peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed -
4 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
5 Sobic.003G050900 dolichyl-P-Man Man-PP-dolichyl mannosyltransferase, putative, expressed K03845: alpha-1,3-mannosyltransferase
6 Sobic.004G261600 expressed protein -
7 Sobic.008G040700 mRNA-decapping enzyme, putative, expressed K12611: mRNA-decapping enzyme 1B
8 Sobic.006G056200 transport protein particle component, Bet3, domain containing protein, expressed -
9 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
10 Sobic.001G393700 expressed protein -
11 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
12 Sobic.003G023300 Alg9-like mannosyltransferase protein, putative, expressed K03846: alpha-1,2-mannosyltransferase
13 Sobic.006G139100 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
14 Sobic.001G051700 expressed protein -
15 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
16 Sobic.004G147500 tetratricopeptide repeat domain containing protein, expressed K09667: protein O-GlcNAc transferase
17 Sobic.002G295500 expressed protein -
18 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
19 Sobic.004G145000 importin-8, putative, expressed -
20 Sobic.008G124800 expressed protein -


Gene co-expression network
sample Sobic003G227100 Sobic003G227100 Sobic006G224800 Sobic006G224800 Sobic003G227100--Sobic006G224800 Sobic005G110499 Sobic005G110499 Sobic003G227100--Sobic005G110499 Sobic003G240700 Sobic003G240700 Sobic003G227100--Sobic003G240700 Sobic001G369000 Sobic001G369000 Sobic003G227100--Sobic001G369000 Sobic003G050900 Sobic003G050900 Sobic003G227100--Sobic003G050900 Sobic004G261600 Sobic004G261600 Sobic003G227100--Sobic004G261600 Sobic008G040700 Sobic008G040700 Sobic003G227100--Sobic008G040700 Sobic006G056200 Sobic006G056200 Sobic003G227100--Sobic006G056200 Sobic003G209200 Sobic003G209200 Sobic003G227100--Sobic003G209200 Sobic003G062300 Sobic003G062300 Sobic006G224800--Sobic003G062300 Sobic003G416700 Sobic003G416700 Sobic006G224800--Sobic003G416700 Sobic006G166200 Sobic006G166200 Sobic006G224800--Sobic006G166200 Sobic003G189600 Sobic003G189600 Sobic006G224800--Sobic003G189600 Sobic004G053500 Sobic004G053500 Sobic006G224800--Sobic004G053500 Sobic009G249700 Sobic009G249700 Sobic006G224800--Sobic009G249700 Sobic004G051200 Sobic004G051200 Sobic006G224800--Sobic004G051200 Sobic002G295500 Sobic002G295500 Sobic006G224800--Sobic002G295500 Sobic002G430300 Sobic002G430300 Sobic006G224800--Sobic002G430300 Sobic005G110499--Sobic003G189600 Sobic001G474400 Sobic001G474400 Sobic005G110499--Sobic001G474400 Sobic001G308400 Sobic001G308400 Sobic005G110499--Sobic001G308400 Sobic003G394200 Sobic003G394200 Sobic005G110499--Sobic003G394200 Sobic005G110499--Sobic004G053500 Sobic002G401500 Sobic002G401500 Sobic005G110499--Sobic002G401500 Sobic006G021700 Sobic006G021700 Sobic005G110499--Sobic006G021700 Sobic002G371700 Sobic002G371700 Sobic005G110499--Sobic002G371700 Sobic005G110499--Sobic003G209200 Sobic003G240700--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic003G240700--Sobic001G335900 Sobic001G170100 Sobic001G170100 Sobic003G240700--Sobic001G170100 Sobic006G138000 Sobic006G138000 Sobic003G240700--Sobic006G138000 Sobic003G314700 Sobic003G314700 Sobic003G240700--Sobic003G314700 Sobic003G293000 Sobic003G293000 Sobic003G240700--Sobic003G293000 Sobic009G049400 Sobic009G049400 Sobic003G240700--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic003G240700--Sobic001G426600 Sobic003G240700--Sobic003G227100 Sobic004G039600 Sobic004G039600 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic007G120500 Sobic007G120500 Sobic001G369000--Sobic007G120500 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic001G369000--Sobic006G138000 Sobic001G369000--Sobic009G049400 Sobic001G369000--Sobic001G426600 Sobic009G229600 Sobic009G229600 Sobic001G369000--Sobic009G229600 Sobic003G050900--Sobic005G110499 Sobic009G003700 Sobic009G003700 Sobic003G050900--Sobic009G003700 Sobic003G050900--Sobic003G227100 Sobic003G284000 Sobic003G284000 Sobic003G050900--Sobic003G284000 Sobic003G050900--Sobic003G209200 Sobic009G077600 Sobic009G077600 Sobic003G050900--Sobic009G077600 Sobic008G055900 Sobic008G055900 Sobic003G050900--Sobic008G055900 Sobic003G050900--Sobic006G166200 Sobic003G023300 Sobic003G023300 Sobic003G050900--Sobic003G023300 Sobic004G228800 Sobic004G228800 Sobic004G261600--Sobic004G228800 Sobic006G126100 Sobic006G126100 Sobic004G261600--Sobic006G126100 Sobic004G261600--Sobic003G209200 Sobic003G104000 Sobic003G104000 Sobic004G261600--Sobic003G104000 Sobic007G005500 Sobic007G005500 Sobic004G261600--Sobic007G005500 Sobic001G251200 Sobic001G251200 Sobic004G261600--Sobic001G251200 Sobic001G415300 Sobic001G415300 Sobic004G261600--Sobic001G415300 Sobic004G004300 Sobic004G004300 Sobic004G261600--Sobic004G004300 Sobic008G099800 Sobic008G099800 Sobic004G261600--Sobic008G099800 Sobic008G040700--Sobic003G227100 Sobic008G040700--Sobic003G240700 Sobic004G145000 Sobic004G145000 Sobic008G040700--Sobic004G145000 Sobic008G040700--Sobic003G104000 Sobic003G194100 Sobic003G194100 Sobic008G040700--Sobic003G194100 SobicK004100 SobicK004100 Sobic008G040700--SobicK004100 Sobic001G003500 Sobic001G003500 Sobic008G040700--Sobic001G003500 Sobic003G099300 Sobic003G099300 Sobic008G040700--Sobic003G099300 Sobic008G040700--Sobic003G050900 Sobic006G056200--Sobic004G039600 Sobic006G056200--Sobic008G055900 Sobic008G129600 Sobic008G129600 Sobic006G056200--Sobic008G129600 Sobic006G056200--Sobic003G099300 Sobic009G226400 Sobic009G226400 Sobic006G056200--Sobic009G226400 Sobic008G103300 Sobic008G103300 Sobic006G056200--Sobic008G103300 Sobic006G056200--Sobic001G369000 Sobic006G056200--SobicK004100 Sobic002G029300 Sobic002G029300 Sobic006G056200--Sobic002G029300 Sobic003G209200--Sobic007G005500 Sobic006G260500 Sobic006G260500 Sobic003G209200--Sobic006G260500 Sobic006G077300 Sobic006G077300 Sobic003G209200--Sobic006G077300 Sobic003G209200--Sobic006G021700 Sobic005G062200 Sobic005G062200 Sobic003G209200--Sobic005G062200 Sobic004G241900 Sobic004G241900 Sobic003G209200--Sobic004G241900 Sobic003G209200--Sobic004G261600 Sobic003G209200--Sobic005G110499 Sobic003G209200--Sobic009G077600
Octagon: transcription factors


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