Gene annotation
Transcriptome id Sobic.006G139100.1
Synonym Sb06g021850, PAB8, PABP8
Functional annotation polyadenylate-binding protein, putative, expressed
UniProt C5YBU9
Pfam PF00658 PF00076
Panther DB PTHR24012 PTHR24012:SF430
NCBI CDD KOG0123; Polyadenylate-binding protein (RRM superfamily)
KEGG Orthology K13126; polyadenylate-binding protein
Gene Ontology GO:0003723; RNA binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G49760 : poly(A) binding protein 8
RAP-DB (Rice) LOC_Os04g42600.2 : polyadenylate-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a056426 , Zm00025a010761
Brachypodium KQJ83441
Barley HORVU2Hr1G087390.1 , HORVU2Hr1G087390.3 , HORVU2Hr1G087390.2
Wheat TraesCS5B02G159400 , TraesCS2D02G358000 , TraesCS2B02G378400 , TraesCS5A02G161800 , TraesCS5A02G161800 , TraesCS2A02G359000 , TraesCS5D02G167000 , TraesCS5D02G167000
Populus -


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cDNA sequences
Sobic.006G139100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G145000 importin-8, putative, expressed -
2 Sobic.002G313900 potassium transporter, putative, expressed -
3 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
4 Sobic.003G150900 protein transport protein-related, putative, expressed -
5 Sobic.003G227100 adaptin, putative, expressed -
6 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
7 Sobic.003G050900 dolichyl-P-Man Man-PP-dolichyl mannosyltransferase, putative, expressed K03845: alpha-1,3-mannosyltransferase
8 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
9 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
10 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
11 Sobic.005G133800 NEF1, putative, expressed -
12 Sobic.001G447300 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
13 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
14 Sobic.002G292900 protein binding protein, putative, expressed -
15 Sobic.004G282100 peptidase, putative, expressed K06013: STE24 endopeptidase
16 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
17 Sobic.004G323700 zinc finger family protein, putative, expressed -
18 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
19 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
20 Sobic.007G005500 ECT protein, putative, expressed -


Gene co-expression network
sample Sobic006G139100 Sobic006G139100 Sobic004G145000 Sobic004G145000 Sobic006G139100--Sobic004G145000 Sobic002G313900 Sobic002G313900 Sobic006G139100--Sobic002G313900 Sobic007G042900 Sobic007G042900 Sobic006G139100--Sobic007G042900 Sobic003G150900 Sobic003G150900 Sobic006G139100--Sobic003G150900 Sobic003G227100 Sobic003G227100 Sobic006G139100--Sobic003G227100 Sobic001G005600 Sobic001G005600 Sobic006G139100--Sobic001G005600 Sobic003G050900 Sobic003G050900 Sobic006G139100--Sobic003G050900 Sobic002G150700 Sobic002G150700 Sobic006G139100--Sobic002G150700 Sobic003G046300 Sobic003G046300 Sobic006G139100--Sobic003G046300 Sobic004G145000--Sobic006G139100 Sobic004G340400 Sobic004G340400 Sobic004G145000--Sobic004G340400 Sobic006G034500 Sobic006G034500 Sobic004G145000--Sobic006G034500 Sobic001G447300 Sobic001G447300 Sobic004G145000--Sobic001G447300 Sobic001G455800 Sobic001G455800 Sobic004G145000--Sobic001G455800 Sobic002G256700 Sobic002G256700 Sobic004G145000--Sobic002G256700 Sobic003G036400 Sobic003G036400 Sobic004G145000--Sobic003G036400 Sobic003G104000 Sobic003G104000 Sobic004G145000--Sobic003G104000 Sobic006G166200 Sobic006G166200 Sobic004G145000--Sobic006G166200 Sobic009G166600 Sobic009G166600 Sobic002G313900--Sobic009G166600 Sobic009G208100 Sobic009G208100 Sobic002G313900--Sobic009G208100 Sobic002G313900--Sobic006G139100 Sobic002G292900 Sobic002G292900 Sobic002G313900--Sobic002G292900 Sobic006G210700 Sobic006G210700 Sobic002G313900--Sobic006G210700 Sobic008G021000 Sobic008G021000 Sobic002G313900--Sobic008G021000 Sobic009G249700 Sobic009G249700 Sobic002G313900--Sobic009G249700 Sobic001G478800 Sobic001G478800 Sobic002G313900--Sobic001G478800 Sobic003G212900 Sobic003G212900 Sobic002G313900--Sobic003G212900 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic007G042900--Sobic009G249700 Sobic001G042200 Sobic001G042200 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic007G042900--Sobic006G139100 Sobic007G042900--Sobic001G005600 Sobic005G114800 Sobic005G114800 Sobic003G150900--Sobic005G114800 Sobic003G150900--Sobic009G166600 Sobic003G150900--Sobic001G005600 Sobic003G150900--Sobic006G139100 Sobic003G150900--Sobic001G042200 Sobic007G146600 Sobic007G146600 Sobic003G150900--Sobic007G146600 Sobic003G150900--Sobic008G021000 Sobic010G077500 Sobic010G077500 Sobic003G150900--Sobic010G077500 Sobic009G160600 Sobic009G160600 Sobic003G150900--Sobic009G160600 Sobic006G224800 Sobic006G224800 Sobic003G227100--Sobic006G224800 Sobic003G227100--Sobic005G110499 Sobic003G240700 Sobic003G240700 Sobic003G227100--Sobic003G240700 Sobic001G369000 Sobic001G369000 Sobic003G227100--Sobic001G369000 Sobic003G227100--Sobic003G050900 Sobic004G261600 Sobic004G261600 Sobic003G227100--Sobic004G261600 Sobic008G040700 Sobic008G040700 Sobic003G227100--Sobic008G040700 Sobic006G056200 Sobic006G056200 Sobic003G227100--Sobic006G056200 Sobic003G209200 Sobic003G209200 Sobic003G227100--Sobic003G209200 Sobic001G005600--Sobic009G160600 Sobic010G129600 Sobic010G129600 Sobic001G005600--Sobic010G129600 Sobic001G005600--Sobic007G042900 Sobic008G140400 Sobic008G140400 Sobic001G005600--Sobic008G140400 Sobic001G005600--Sobic003G150900 Sobic004G323700 Sobic004G323700 Sobic001G005600--Sobic004G323700 Sobic004G068500 Sobic004G068500 Sobic001G005600--Sobic004G068500 Sobic001G005600--Sobic008G021000 Sobic001G161900 Sobic001G161900 Sobic001G005600--Sobic001G161900 Sobic003G050900--Sobic005G110499 Sobic009G003700 Sobic009G003700 Sobic003G050900--Sobic009G003700 Sobic003G050900--Sobic003G227100 Sobic003G284000 Sobic003G284000 Sobic003G050900--Sobic003G284000 Sobic003G050900--Sobic003G209200 Sobic009G077600 Sobic009G077600 Sobic003G050900--Sobic009G077600 Sobic008G055900 Sobic008G055900 Sobic003G050900--Sobic008G055900 Sobic003G050900--Sobic006G166200 Sobic003G023300 Sobic003G023300 Sobic003G050900--Sobic003G023300 Sobic002G408900 Sobic002G408900 Sobic002G150700--Sobic002G408900 Sobic006G002800 Sobic006G002800 Sobic002G150700--Sobic006G002800 Sobic002G150700--Sobic001G455800 Sobic003G146600 Sobic003G146600 Sobic002G150700--Sobic003G146600 Sobic001G099900 Sobic001G099900 Sobic002G150700--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic002G150700--Sobic004G208500 Sobic002G398700 Sobic002G398700 Sobic002G150700--Sobic002G398700 Sobic001G145400 Sobic001G145400 Sobic002G150700--Sobic001G145400 Sobic003G304400 Sobic003G304400 Sobic002G150700--Sobic003G304400 Sobic006G188500 Sobic006G188500 Sobic003G046300--Sobic006G188500 Sobic008G103300 Sobic008G103300 Sobic003G046300--Sobic008G103300 Sobic002G142900 Sobic002G142900 Sobic003G046300--Sobic002G142900 Sobic002G371700 Sobic002G371700 Sobic003G046300--Sobic002G371700 Sobic003G132000 Sobic003G132000 Sobic003G046300--Sobic003G132000 Sobic007G000200 Sobic007G000200 Sobic003G046300--Sobic007G000200 Sobic002G263600 Sobic002G263600 Sobic003G046300--Sobic002G263600 Sobic003G046300--Sobic001G455800 Sobic001G487100 Sobic001G487100 Sobic003G046300--Sobic001G487100
Octagon: transcription factors


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