Gene annotation
Transcriptome id Sobic.002G292900.1
Synonym Sb02g032390
Functional annotation protein binding protein, putative, expressed
UniProt C5X7R8
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF98
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G03000 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g04950.2 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a014536 , Zm00025a047930
Brachypodium KQK07624 , KQK07625
Barley HORVU1Hr1G018310.2 , HORVU1Hr1G018310.6 , HORVU1Hr1G018310.7 , HORVU1Hr1G018310.4 , HORVU1Hr1G018310.5 , HORVU1Hr1G018310.3 , HORVU1Hr1G018310.8 , HORVU1Hr1G018310.9 , HORVU1Hr1G018310.1
Wheat TraesCS1D02G085400 , TraesCS1A02G084200 , TraesCS1B02G101700
Populus -


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cDNA sequences
Sobic.002G292900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G320700 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
2 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
3 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
4 Sobic.002G313900 potassium transporter, putative, expressed -
5 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
6 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
7 Sobic.005G034700 PHD-finger family protein, expressed -
8 Sobic.001G237600 transcription factor Dp, putative, expressed K04683: transcription factor Dp-1
9 Sobic.001G340300 tentative name(PubMedID : 31536532)@expressed protein -
10 Sobic.009G249700 expressed protein -
11 Sobic.006G210700 potassium transporter, putative, expressed -
12 Sobic.006G139100 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
13 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
14 Sobic.006G141600 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
15 Sobic.005G197100 acyltransferase, putative, expressed K13523: lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase
16 Sobic.006G179100 transmembrane protein, putative, expressed -
17 Sobic.003G150900 protein transport protein-related, putative, expressed -
18 Sobic.009G154500 sec23/Sec24 zinc finger family protein, expressed -
19 Sobic.002G079000 expressed protein -
20 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1


Gene co-expression network
sample Sobic002G292900 Sobic002G292900 Sobic004G320700 Sobic004G320700 Sobic002G292900--Sobic004G320700 Sobic010G244900 Sobic010G244900 Sobic002G292900--Sobic010G244900 Sobic009G166600 Sobic009G166600 Sobic002G292900--Sobic009G166600 Sobic002G313900 Sobic002G313900 Sobic002G292900--Sobic002G313900 Sobic006G032300 Sobic006G032300 Sobic002G292900--Sobic006G032300 Sobic010G086600 Sobic010G086600 Sobic002G292900--Sobic010G086600 Sobic005G034700 Sobic005G034700 Sobic002G292900--Sobic005G034700 Sobic001G237600 Sobic001G237600 Sobic002G292900--Sobic001G237600 Sobic001G340300 Sobic001G340300 Sobic002G292900--Sobic001G340300 Sobic004G320700--Sobic002G292900 Sobic004G320700--Sobic001G237600 Sobic002G079000 Sobic002G079000 Sobic004G320700--Sobic002G079000 Sobic010G186100 Sobic010G186100 Sobic004G320700--Sobic010G186100 Sobic004G320700--Sobic010G244900 Sobic006G210700 Sobic006G210700 Sobic004G320700--Sobic006G210700 Sobic007G087000 Sobic007G087000 Sobic004G320700--Sobic007G087000 Sobic004G320700--Sobic006G032300 Sobic009G228000 Sobic009G228000 Sobic004G320700--Sobic009G228000 Sobic004G172500 Sobic004G172500 Sobic010G244900--Sobic004G172500 Sobic010G244900--Sobic002G292900 Sobic004G213800 Sobic004G213800 Sobic010G244900--Sobic004G213800 Sobic010G244900--Sobic001G237600 Sobic010G244900--Sobic004G320700 Sobic006G039400 Sobic006G039400 Sobic010G244900--Sobic006G039400 Sobic003G043000 Sobic003G043000 Sobic010G244900--Sobic003G043000 Sobic003G241700 Sobic003G241700 Sobic010G244900--Sobic003G241700 Sobic005G150600 Sobic005G150600 Sobic010G244900--Sobic005G150600 Sobic009G166600--Sobic002G313900 Sobic005G114800 Sobic005G114800 Sobic009G166600--Sobic005G114800 Sobic009G166600--Sobic006G210700 Sobic005G197100 Sobic005G197100 Sobic009G166600--Sobic005G197100 Sobic009G249700 Sobic009G249700 Sobic009G166600--Sobic009G249700 Sobic008G021000 Sobic008G021000 Sobic009G166600--Sobic008G021000 Sobic003G394200 Sobic003G394200 Sobic009G166600--Sobic003G394200 Sobic009G166600--Sobic002G292900 Sobic006G128100 Sobic006G128100 Sobic009G166600--Sobic006G128100 Sobic002G313900--Sobic009G166600 Sobic009G208100 Sobic009G208100 Sobic002G313900--Sobic009G208100 Sobic006G139100 Sobic006G139100 Sobic002G313900--Sobic006G139100 Sobic002G313900--Sobic002G292900 Sobic002G313900--Sobic006G210700 Sobic002G313900--Sobic008G021000 Sobic002G313900--Sobic009G249700 Sobic001G478800 Sobic001G478800 Sobic002G313900--Sobic001G478800 Sobic003G212900 Sobic003G212900 Sobic002G313900--Sobic003G212900 Sobic002G335600 Sobic002G335600 Sobic006G032300--Sobic002G335600 Sobic008G088872 Sobic008G088872 Sobic006G032300--Sobic008G088872 Sobic004G053500 Sobic004G053500 Sobic006G032300--Sobic004G053500 Sobic007G018400 Sobic007G018400 Sobic006G032300--Sobic007G018400 Sobic001G273700 Sobic001G273700 Sobic006G032300--Sobic001G273700 Sobic002G042600 Sobic002G042600 Sobic006G032300--Sobic002G042600 Sobic001G191700 Sobic001G191700 Sobic006G032300--Sobic001G191700 Sobic009G131300 Sobic009G131300 Sobic006G032300--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic006G032300--Sobic002G429300 Sobic007G042900 Sobic007G042900 Sobic010G086600--Sobic007G042900 Sobic002G193300 Sobic002G193300 Sobic010G086600--Sobic002G193300 Sobic001G542450 Sobic001G542450 Sobic010G086600--Sobic001G542450 Sobic008G002300 Sobic008G002300 Sobic010G086600--Sobic008G002300 Sobic010G086600--Sobic002G292900 Sobic010G089400 Sobic010G089400 Sobic010G086600--Sobic010G089400 Sobic002G371300 Sobic002G371300 Sobic010G086600--Sobic002G371300 Sobic006G088200 Sobic006G088200 Sobic010G086600--Sobic006G088200 Sobic007G180600 Sobic007G180600 Sobic010G086600--Sobic007G180600 Sobic001G263600 Sobic001G263600 Sobic005G034700--Sobic001G263600 Sobic005G034700--Sobic002G335600 Sobic005G034700--Sobic009G131300 Sobic005G034700--Sobic009G249700 Sobic004G040500 Sobic004G040500 Sobic005G034700--Sobic004G040500 Sobic005G034700--Sobic008G088872 Sobic003G170700 Sobic003G170700 Sobic005G034700--Sobic003G170700 Sobic005G034700--Sobic006G032300 Sobic003G093800 Sobic003G093800 Sobic005G034700--Sobic003G093800 Sobic003G363700 Sobic003G363700 Sobic001G237600--Sobic003G363700 Sobic001G237600--Sobic004G320700 Sobic001G237600--Sobic002G079000 Sobic001G237600--Sobic007G087000 Sobic001G237600--Sobic006G039400 Sobic003G202600 Sobic003G202600 Sobic001G237600--Sobic003G202600 Sobic001G237600--Sobic010G244900 Sobic001G095000 Sobic001G095000 Sobic001G237600--Sobic001G095000 Sobic001G237600--Sobic002G292900 Sobic001G340300--Sobic009G228000 Sobic001G340300--Sobic003G043000 Sobic009G194000 Sobic009G194000 Sobic001G340300--Sobic009G194000 Sobic003G181700 Sobic003G181700 Sobic001G340300--Sobic003G181700 Sobic001G042200 Sobic001G042200 Sobic001G340300--Sobic001G042200 Sobic001G340300--Sobic009G166600 Sobic010G077500 Sobic010G077500 Sobic001G340300--Sobic010G077500 Sobic001G340300--Sobic003G363700 Sobic009G107300 Sobic009G107300 Sobic001G340300--Sobic009G107300
Octagon: transcription factors


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