Gene annotation
Transcriptome id Sobic.005G034700.1
Synonym Sb05g002930
Functional annotation PHD-finger family protein, expressed
UniProt A0A1B6PPY4
Pfam PF15612 PF02791 PF00628
Panther DB PTHR22880 PTHR22880:SF152
NCBI CDD KOG1473; Nucleosome remodeling factor, subunit NURF301/BPTF
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G35210 : metalloendopeptidases;zinc ion binding;DNA binding
RAP-DB (Rice) LOC_Os11g05130.1 : PHD-finger family protein, expressed
MaizeGDB (Corn) Zm00025a053865 , Zm00025a013028
Brachypodium KQJ89596 , PNT65458 , PNT65459 , KQJ89595
Barley HORVU4Hr1G025620.7 , HORVU4Hr1G025620.4 , HORVU4Hr1G025620.2 , HORVU4Hr1G025620.1 , HORVU4Hr1G025620.9 , HORVU4Hr1G025620.8 , HORVU5Hr1G041230.12 , HORVU5Hr1G041230.11 , HORVU5Hr1G041230.10 , HORVU5Hr1G041230.14 , HORVU4Hr1G025620.26 , HORVU4Hr1G025620.27 , HORVU4Hr1G025620.24 , HORVU4Hr1G025620.25 , HORVU4Hr1G025620.22 , HORVU4Hr1G025620.23 , HORVU4Hr1G025620.20 , HORVU4Hr1G025620.21 , HORVU4Hr1G025620.28 , HORVU4Hr1G025620.29 , HORVU5Hr1G041230.3 , HORVU5Hr1G041230.2 , HORVU5Hr1G041230.1 , HORVU5Hr1G041230.7 , HORVU5Hr1G041230.6 , HORVU5Hr1G041230.4 , HORVU5Hr1G041230.9 , HORVU5Hr1G041230.8 , HORVU5Hr1G041230.13 , HORVU4Hr1G025620.19 , HORVU4Hr1G025620.18 , HORVU4Hr1G025620.17 , HORVU4Hr1G025620.16 , HORVU4Hr1G025620.15 , HORVU4Hr1G025620.14 , HORVU4Hr1G025620.13 , HORVU4Hr1G025620.12 , HORVU4Hr1G025620.10
Wheat TraesCS4A02G184500 , TraesCS5D02G138300 , TraesCS5D02G138300 , TraesCS4B02G134200 , TraesCS5A02G130800 , TraesCS5A02G130800 , TraesCS4D02G129100 , TraesCS5B02G130700 , TraesCS5B02G130700 , TraesCS5B02G130700
Populus -


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cDNA sequences
Sobic.005G034700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
2 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
3 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
4 Sobic.009G249700 expressed protein -
5 Sobic.004G040500 expressed protein -
6 Sobic.008G088872 - -
7 Sobic.003G170700 expressed protein -
8 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
9 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A
10 Sobic.002G429300 importin subunit beta, putative, expressed -
11 Sobic.006G224800 expressed protein -
12 Sobic.003G444800 expressed protein -
13 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
14 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
15 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
16 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
17 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
18 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
19 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
20 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7


Gene co-expression network
sample Sobic005G034700 Sobic005G034700 Sobic001G263600 Sobic001G263600 Sobic005G034700--Sobic001G263600 Sobic002G335600 Sobic002G335600 Sobic005G034700--Sobic002G335600 Sobic009G131300 Sobic009G131300 Sobic005G034700--Sobic009G131300 Sobic009G249700 Sobic009G249700 Sobic005G034700--Sobic009G249700 Sobic004G040500 Sobic004G040500 Sobic005G034700--Sobic004G040500 Sobic008G088872 Sobic008G088872 Sobic005G034700--Sobic008G088872 Sobic003G170700 Sobic003G170700 Sobic005G034700--Sobic003G170700 Sobic006G032300 Sobic006G032300 Sobic005G034700--Sobic006G032300 Sobic003G093800 Sobic003G093800 Sobic005G034700--Sobic003G093800 Sobic001G263600--Sobic008G088872 Sobic002G429300 Sobic002G429300 Sobic001G263600--Sobic002G429300 Sobic002G142900 Sobic002G142900 Sobic001G263600--Sobic002G142900 Sobic005G062200 Sobic005G062200 Sobic001G263600--Sobic005G062200 Sobic008G098900 Sobic008G098900 Sobic001G263600--Sobic008G098900 Sobic002G042600 Sobic002G042600 Sobic001G263600--Sobic002G042600 Sobic001G273700 Sobic001G273700 Sobic001G263600--Sobic001G273700 Sobic003G072200 Sobic003G072200 Sobic001G263600--Sobic003G072200 Sobic001G263600--Sobic009G131300 Sobic006G184900 Sobic006G184900 Sobic002G335600--Sobic006G184900 Sobic005G162500 Sobic005G162500 Sobic002G335600--Sobic005G162500 Sobic002G335600--Sobic006G032300 Sobic002G335600--Sobic009G131300 Sobic002G335600--Sobic002G429300 Sobic001G493700 Sobic001G493700 Sobic002G335600--Sobic001G493700 Sobic002G335600--Sobic008G088872 Sobic002G335600--Sobic004G040500 Sobic004G053500 Sobic004G053500 Sobic002G335600--Sobic004G053500 Sobic009G131300--Sobic002G429300 Sobic002G401500 Sobic002G401500 Sobic009G131300--Sobic002G401500 Sobic009G131300--Sobic005G162500 Sobic009G131300--Sobic008G088872 Sobic010G059500 Sobic010G059500 Sobic009G131300--Sobic010G059500 Sobic009G131300--Sobic008G098900 Sobic009G131300--Sobic006G184900 Sobic009G131300--Sobic001G493700 Sobic009G084900 Sobic009G084900 Sobic009G131300--Sobic009G084900 Sobic007G218000 Sobic007G218000 Sobic009G249700--Sobic007G218000 Sobic009G249700--Sobic003G093800 Sobic003G189600 Sobic003G189600 Sobic009G249700--Sobic003G189600 Sobic003G394200 Sobic003G394200 Sobic009G249700--Sobic003G394200 Sobic009G249700--Sobic005G034700 Sobic004G345400 Sobic004G345400 Sobic009G249700--Sobic004G345400 Sobic010G169900 Sobic010G169900 Sobic009G249700--Sobic010G169900 Sobic003G444800 Sobic003G444800 Sobic009G249700--Sobic003G444800 Sobic007G042900 Sobic007G042900 Sobic009G249700--Sobic007G042900 Sobic008G092600 Sobic008G092600 Sobic004G040500--Sobic008G092600 Sobic002G147600 Sobic002G147600 Sobic004G040500--Sobic002G147600 Sobic004G040500--Sobic002G335600 Sobic004G040500--Sobic001G493700 Sobic004G040500--Sobic003G072200 Sobic003G233400 Sobic003G233400 Sobic004G040500--Sobic003G233400 Sobic004G023100 Sobic004G023100 Sobic004G040500--Sobic004G023100 Sobic001G287500 Sobic001G287500 Sobic004G040500--Sobic001G287500 Sobic003G171400 Sobic003G171400 Sobic004G040500--Sobic003G171400 Sobic008G088872--Sobic005G162500 Sobic001G370900 Sobic001G370900 Sobic008G088872--Sobic001G370900 Sobic008G088872--Sobic009G131300 Sobic008G088872--Sobic006G184900 Sobic008G088872--Sobic005G062200 Sobic008G088872--Sobic001G263600 Sobic008G088872--Sobic002G042600 Sobic008G088872--Sobic002G429300 Sobic008G088872--Sobic002G335600 Sobic009G256400 Sobic009G256400 Sobic003G170700--Sobic009G256400 Sobic003G170700--Sobic008G088872 Sobic003G170700--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic003G170700--Sobic001G457800 Sobic003G170700--Sobic005G162500 Sobic003G170700--Sobic003G072200 Sobic001G542400 Sobic001G542400 Sobic003G170700--Sobic001G542400 Sobic006G040500 Sobic006G040500 Sobic003G170700--Sobic006G040500 Sobic003G170700--Sobic004G040500 Sobic006G032300--Sobic002G335600 Sobic006G032300--Sobic008G088872 Sobic006G032300--Sobic004G053500 Sobic007G018400 Sobic007G018400 Sobic006G032300--Sobic007G018400 Sobic006G032300--Sobic001G273700 Sobic006G032300--Sobic002G042600 Sobic001G191700 Sobic001G191700 Sobic006G032300--Sobic001G191700 Sobic006G032300--Sobic009G131300 Sobic006G032300--Sobic002G429300 Sobic010G116600 Sobic010G116600 Sobic003G093800--Sobic010G116600 Sobic001G065000 Sobic001G065000 Sobic003G093800--Sobic001G065000 Sobic003G408600 Sobic003G408600 Sobic003G093800--Sobic003G408600 Sobic001G536400 Sobic001G536400 Sobic003G093800--Sobic001G536400 Sobic001G058700 Sobic001G058700 Sobic003G093800--Sobic001G058700 Sobic002G299700 Sobic002G299700 Sobic003G093800--Sobic002G299700 Sobic009G044800 Sobic009G044800 Sobic003G093800--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic003G093800--Sobic002G071500 Sobic003G093800--Sobic009G249700
Octagon: transcription factors


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