Gene annotation
Transcriptome id Sobic.006G184900.1
Synonym Sb06g025910, VIP6, ELF8
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5YE49
Pfam PF13181 PF13414 PF00515
Panther DB PTHR14027 PTHR14027:SF2
NCBI CDD -
KEGG Orthology K15176; RNA polymerase-associated protein CTR9
Gene Ontology GO:0005515; protein binding GO:0016593Cdc73/Paf1 complex GO:0016570histone modification GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT2G06210 : binding
RAP-DB (Rice) LOC_Os07g29360.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032131 , Zm00025a010149
Brachypodium KQJ94656 , KQJ94657 , KQJ94658 , KQJ94659 , KQJ94660 , PNT66459
Barley HORVU6Hr1G078440.9 , HORVU6Hr1G078440.8 , HORVU6Hr1G078440.7 , HORVU6Hr1G078440.6 , HORVU6Hr1G078440.5 , HORVU6Hr1G078440.4 , HORVU6Hr1G078440.3 , HORVU6Hr1G078440.2 , HORVU6Hr1G078440.1 , HORVU6Hr1G078440.14 , HORVU6Hr1G078440.11 , HORVU6Hr1G078440.10
Wheat TraesCS6A02G320000 , TraesCS6A02G320000 , TraesCS6A02G320000 , TraesCS6B02G350800 , TraesCS6B02G350800 , TraesCS6B02G350800 , TraesCS6D02G299500 , TraesCS6D02G299500 , TraesCS6D02G299500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
2 Sobic.002G429300 importin subunit beta, putative, expressed -
3 Sobic.008G088872 - -
4 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
5 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
6 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
7 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
8 Sobic.002G179400 DNA binding protein, putative, expressed -
9 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
10 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
11 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
12 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
13 Sobic.010G169600 OsCML2 - Calmodulin-related calcium sensor protein, expressed -
14 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
15 Sobic.009G255700 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
16 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
17 Sobic.003G166750 - K15188: cyclin T
18 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -
19 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
20 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4


Gene co-expression network
sample Sobic006G184900 Sobic006G184900 Sobic002G335600 Sobic002G335600 Sobic006G184900--Sobic002G335600 Sobic002G429300 Sobic002G429300 Sobic006G184900--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic006G184900--Sobic008G088872 Sobic002G042600 Sobic002G042600 Sobic006G184900--Sobic002G042600 Sobic001G370900 Sobic001G370900 Sobic006G184900--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic006G184900--Sobic009G131300 Sobic001G493700 Sobic001G493700 Sobic006G184900--Sobic001G493700 Sobic002G179400 Sobic002G179400 Sobic006G184900--Sobic002G179400 Sobic005G062200 Sobic005G062200 Sobic006G184900--Sobic005G062200 Sobic002G335600--Sobic006G184900 Sobic005G162500 Sobic005G162500 Sobic002G335600--Sobic005G162500 Sobic006G032300 Sobic006G032300 Sobic002G335600--Sobic006G032300 Sobic002G335600--Sobic009G131300 Sobic002G335600--Sobic002G429300 Sobic002G335600--Sobic001G493700 Sobic002G335600--Sobic008G088872 Sobic004G040500 Sobic004G040500 Sobic002G335600--Sobic004G040500 Sobic004G053500 Sobic004G053500 Sobic002G335600--Sobic004G053500 Sobic002G429300--Sobic009G131300 Sobic002G429300--Sobic005G162500 Sobic002G429300--Sobic006G184900 Sobic001G263600 Sobic001G263600 Sobic002G429300--Sobic001G263600 Sobic002G429300--Sobic002G042600 Sobic008G098900 Sobic008G098900 Sobic002G429300--Sobic008G098900 Sobic002G429300--Sobic001G493700 Sobic002G429300--Sobic002G335600 Sobic002G429300--Sobic008G088872 Sobic008G088872--Sobic005G162500 Sobic008G088872--Sobic001G370900 Sobic008G088872--Sobic009G131300 Sobic008G088872--Sobic006G184900 Sobic008G088872--Sobic005G062200 Sobic008G088872--Sobic001G263600 Sobic008G088872--Sobic002G042600 Sobic008G088872--Sobic002G429300 Sobic008G088872--Sobic002G335600 Sobic001G065100 Sobic001G065100 Sobic002G042600--Sobic001G065100 Sobic002G042600--Sobic006G184900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G042600--Sobic002G179400 Sobic004G322400 Sobic004G322400 Sobic002G042600--Sobic004G322400 Sobic002G042600--Sobic002G429300 Sobic002G042600--Sobic008G088872 Sobic002G042600--Sobic001G370900 Sobic001G370900--Sobic008G098900 Sobic005G001000 Sobic005G001000 Sobic001G370900--Sobic005G001000 Sobic009G256400 Sobic009G256400 Sobic001G370900--Sobic009G256400 Sobic002G146300 Sobic002G146300 Sobic001G370900--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic001G370900--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic001G370900--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic001G370900--Sobic004G276400 Sobic008G001200 Sobic008G001200 Sobic001G370900--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic001G370900--Sobic001G457800 Sobic009G131300--Sobic002G429300 Sobic009G131300--Sobic002G401500 Sobic009G131300--Sobic005G162500 Sobic009G131300--Sobic008G088872 Sobic010G059500 Sobic010G059500 Sobic009G131300--Sobic010G059500 Sobic009G131300--Sobic008G098900 Sobic009G131300--Sobic006G184900 Sobic009G131300--Sobic001G493700 Sobic009G084900 Sobic009G084900 Sobic009G131300--Sobic009G084900 Sobic001G493700--Sobic002G179400 Sobic001G493700--Sobic005G162500 Sobic001G493700--Sobic006G184900 Sobic002G133300 Sobic002G133300 Sobic001G493700--Sobic002G133300 Sobic001G493700--Sobic009G131300 Sobic001G493700--Sobic002G429300 Sobic001G493700--Sobic002G042600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic002G179400--Sobic001G493700 Sobic002G179400--Sobic002G042600 Sobic002G179400--Sobic004G053500 Sobic002G179400--Sobic002G429300 Sobic002G179400--Sobic006G184900 Sobic003G233400 Sobic003G233400 Sobic002G179400--Sobic003G233400 Sobic002G179400--Sobic002G133300 Sobic002G179400--Sobic001G065100 Sobic002G179400--Sobic004G322400 Sobic005G062200--Sobic008G088872 Sobic005G062200--Sobic001G263600 Sobic005G062200--Sobic002G401500 Sobic005G062200--Sobic006G184900 Sobic005G062200--Sobic002G042600 Sobic003G209200 Sobic003G209200 Sobic005G062200--Sobic003G209200 Sobic003G114400 Sobic003G114400 Sobic005G062200--Sobic003G114400 Sobic005G062200--Sobic001G065100 Sobic005G062200--Sobic002G335600
Octagon: transcription factors


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