Gene annotation
Transcriptome id Sobic.008G085300.1
Synonym Sb08g008620, DME
Functional annotation hhH-GPD superfamily base excision DNA repair protein, expressed
UniProt A0A1Z5R5E2
Pfam PF15629 PF15628
Panther DB PTHR10359 PTHR10359:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04560 : HhH-GPD base excision DNA repair family protein
RAP-DB (Rice) LOC_Os01g11900.1 : hhH-GPD superfamily base excision DNA repair protein, expressed
MaizeGDB (Corn) Zm00025a020351 , Zm00025a034252
Brachypodium KQJ99522 , KQJ86995 , KQK05991 , KQK05992 , PNT62848 , PNT71154 , PNT71155 , PNT71156 , PNT71153
Barley -
Wheat TraesCS5D02G173300 , TraesCS5D02G173300 , TraesCS5A02G169000 , TraesCS1A02G349600 , TraesCS1B02G364100 , TraesCS1B02G364100 , TraesCS1D02G352500 , TraesCS1D02G352500 , TraesCS1D02G352500 , TraesCS5B02G165800 , TraesCS5B02G165800
Populus PNT18303 , PNT18304 , PNT18305


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
2 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
3 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
4 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
5 Sobic.008G092600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
6 Sobic.002G147600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
7 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
8 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
9 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
10 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
11 Sobic.004G023100 protein binding protein, putative, expressed -
12 Sobic.010G169600 OsCML2 - Calmodulin-related calcium sensor protein, expressed -
13 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
14 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
15 Sobic.003G233400 expressed protein -
16 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
17 Sobic.004G040500 expressed protein -
18 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
19 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
20 Sobic.002G429300 importin subunit beta, putative, expressed -


Gene co-expression network
sample Sobic008G085300 Sobic008G085300 Sobic008G098900 Sobic008G098900 Sobic008G085300--Sobic008G098900 Sobic001G542500 Sobic001G542500 Sobic008G085300--Sobic001G542500 Sobic005G162500 Sobic005G162500 Sobic008G085300--Sobic005G162500 Sobic004G276400 Sobic004G276400 Sobic008G085300--Sobic004G276400 Sobic008G092600 Sobic008G092600 Sobic008G085300--Sobic008G092600 Sobic002G147600 Sobic002G147600 Sobic008G085300--Sobic002G147600 Sobic003G186000 Sobic003G186000 Sobic008G085300--Sobic003G186000 Sobic001G370900 Sobic001G370900 Sobic008G085300--Sobic001G370900 Sobic004G291900 Sobic004G291900 Sobic008G085300--Sobic004G291900 Sobic008G098900--Sobic001G370900 Sobic008G098900--Sobic008G085300 Sobic001G117200 Sobic001G117200 Sobic008G098900--Sobic001G117200 Sobic003G205200 Sobic003G205200 Sobic008G098900--Sobic003G205200 Sobic005G001000 Sobic005G001000 Sobic008G098900--Sobic005G001000 Sobic003G072200 Sobic003G072200 Sobic008G098900--Sobic003G072200 Sobic008G098900--Sobic005G162500 Sobic002G042600 Sobic002G042600 Sobic008G098900--Sobic002G042600 Sobic008G098900--Sobic004G276400 Sobic001G542500--Sobic004G291900 Sobic001G289800 Sobic001G289800 Sobic001G542500--Sobic001G289800 Sobic001G542500--Sobic008G085300 Sobic001G542500--Sobic004G276400 Sobic001G542500--Sobic008G098900 Sobic003G196300 Sobic003G196300 Sobic001G542500--Sobic003G196300 Sobic001G542500--Sobic001G117200 Sobic009G109200 Sobic009G109200 Sobic001G542500--Sobic009G109200 Sobic004G174200 Sobic004G174200 Sobic001G542500--Sobic004G174200 Sobic001G493700 Sobic001G493700 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic005G162500--Sobic003G186000 Sobic005G162500--Sobic008G098900 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic004G276400--Sobic003G186000 Sobic010G010700 Sobic010G010700 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic001G194200 Sobic001G194200 Sobic004G276400--Sobic001G194200 Sobic004G034900 Sobic004G034900 Sobic004G276400--Sobic004G034900 Sobic007G062800 Sobic007G062800 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic008G001200 Sobic008G001200 Sobic004G276400--Sobic008G001200 Sobic007G098500 Sobic007G098500 Sobic008G092600--Sobic007G098500 Sobic008G092600--Sobic002G147600 Sobic001G137000 Sobic001G137000 Sobic008G092600--Sobic001G137000 Sobic004G040500 Sobic004G040500 Sobic008G092600--Sobic004G040500 Sobic008G092600--Sobic003G072200 Sobic008G092600--Sobic008G098900 Sobic008G092600--Sobic008G085300 Sobic003G233400 Sobic003G233400 Sobic008G092600--Sobic003G233400 Sobic008G092600--Sobic001G117200 Sobic002G147600--Sobic008G092600 Sobic002G147600--Sobic008G098900 Sobic002G147600--Sobic004G040500 Sobic002G147600--Sobic008G085300 Sobic002G146300 Sobic002G146300 Sobic002G147600--Sobic002G146300 Sobic002G147600--Sobic002G335600 Sobic007G133700 Sobic007G133700 Sobic002G147600--Sobic007G133700 Sobic002G147600--Sobic003G205200 Sobic002G147600--Sobic001G370900 Sobic003G186000--Sobic004G276400 Sobic003G186000--Sobic010G105200 Sobic003G186000--Sobic010G010700 Sobic003G186000--Sobic005G001000 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic007G103100 Sobic007G103100 Sobic003G186000--Sobic007G103100 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic009G256400 Sobic009G256400 Sobic001G370900--Sobic009G256400 Sobic001G370900--Sobic002G146300 Sobic001G370900--Sobic003G205200 Sobic001G370900--Sobic001G194200 Sobic001G370900--Sobic004G276400 Sobic001G370900--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic001G370900--Sobic001G457800 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G291900--Sobic004G174200 Sobic004G291900--Sobic004G276400 Sobic004G291900--Sobic005G001000 Sobic004G291900--Sobic004G034900 Sobic004G291900--Sobic009G256400 Sobic001G002000 Sobic001G002000 Sobic004G291900--Sobic001G002000 Sobic004G291900--Sobic010G010700
Octagon: transcription factors


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